Helicobacter pylori SJM180: HPSJM_07970
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Entry
HPSJM_07970 CDS
T01323
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpm
Helicobacter pylori SJM180
Pathway
hpm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPSJM_07970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpm03400
]
HPSJM_07970
Enzymes [BR:
hpm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPSJM_07970
DNA repair and recombination proteins [BR:
hpm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPSJM_07970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
ADO03144
LinkDB
All DBs
Position
complement(1610920..1613919)
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSSLYRALNKGFDYQILACKDFKESKLAKEVISYFKPNIKAVLFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQETIIIAPISALLHPLPKKELLESFKITLLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYVPNSKAYRLSFFDTECESIKEFDPTTQMSL
KEELLEIEIPPTLFSLDEPSYKNLKTKVEQSPLNSFSKDLTSFGLWFLGEKAQDLLSVYK
SVISPRALEEIQELASLNELDCERFKSLKVLENAQGYEDLEIHAHALEGFIALHSNHKIT
LLAPNKTILDNAISALERSNIECVIAPFVLNFRTPDGIFISLNSFERKKKHRKSKLALNE
LNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGEDKLLLPVENLHLIARYVAQS
DSVPAKDRLGKGSFLKLKAKVRTKLLEIASKIIELAAERNLILGKKMDTHLAELEVFKSH
AGFEYTRDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYASEKNKLLKAVELGQVDVLIGTHAILGAKF
KNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTPP
TDRKPSRTFLKEKNDELLKEIIYRELRRNGQIFYIHNHIASISKVKTKLEELIPKLKIAI
LHSQINANKSEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLGVSAFLNPELIASDSLRLD
LYRRLSLCENTDEVGQIHEEIEDRFGKMDDLSAQFLQIITLKILANQLGIIKLSNFNQNI
TITYNDEHKESLKAPSKDDNDILETLLKHLRAQISLKRR
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagtctttatagagccttaaacaaaggctttgattatcaaatactcgct
tgtaaggattttaaagaatccaagctcgctaaagaagtcataagctattttaagccaaat
attaaagccgttcttttcccggagtttagggctaaaaaaaacgacgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttgagggagttttatcaagccttagaaaac
aagcaagaaactatcatcattgcccctattagcgcgttattgcaccctttacccaaaaaa
gaacttttagagagctttaaaatcactcttttagaaaaatataaccttaaggatttgaaa
gacaagctcttttattatggctatgaaattttagacttagtggaagtggaaggcgaagcg
agctttaggggggatattgtggatatttatgtacccaattctaaagcgtatcgcttgagt
ttttttgacacggagtgtgagagcattaaggaatttgaccctaccactcaaatgagcctt
aaagaagagttgttagaaattgaaatcccccccacgctttttagtttggacgaaccatct
tataagaatctaaaaacaaaagtggagcaaagccccttaaatagcttttctaaagattta
accagttttggtttgtggtttttaggagaaaaagcgcaagacttgctaagcgtttataaa
agcgttataagccctagagctttagaagaaattcaagaattagcgagcttaaacgaattg
gattgtgagcgtttcaaatctttaaaggttttagaaaacgcgcaaggctatgaagattta
gaaatccatgcgcatgccctagaaggctttatcgctttgcattcaaatcataaaatcacg
ctcctagcccccaataaaacgattttagacaacgcgataagcgcgcttgaaagaagcaat
attgaatgcgtgatcgccccctttgtgttaaattttagaacccctgatgggatttttatc
tcgctcaattcttttgaaaggaagaaaaagcatagaaaatccaagctcgctttgaacgag
ttgaatccgggcgaatgggtggtgcatgatgattatggggtgggcgtgttttctcaatta
gtccagcacagcgttttagggagcaagagggattttttagaaatcgcttatttgggcgaa
gacaaactgctgttgccagtagaaaatttgcatctcatcgctcgctatgtggcgcaaagc
gatagcgtgccagctaaagaccggctagggaaagggagctttctcaaattaaaagctaaa
gtcaggactaagcttttagagattgctagtaagatcattgaactagcggccgaacgcaat
ttgatcttgggtaaaaagatggacacgcatttagcggagttggaagtctttaaatcgcat
gcggggtttgaatacacaagagatcaagaaaaggctatcgctgaaatttcaaaggattta
agctctcacagggtgatggatagacttttgagcggggatgtgggttttgggaaaacagaa
gtggcgatgcatgcaattttttgcgcgtttttgaacggctttcaaagcgcactagttgtg
cctactactttattagcgcaccagcattttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatgcgagcgaaaaaaacaagcttttaaaagcg
gtggagttagggcaagttgatgtgctaataggcacgcatgcgattttaggcgcgaaattc
aaaaacttgggcttggtggtggtggatgaagagcataaatttggcgtgaaacaaaaagaa
gctttaaaagaattgagcaaaagcgtgcattttttaagcatgtccgctacgcctatccca
cgcactctaaacatggcgctctctcaaattaaaggcattagctctttaaaaaccccaccc
acagacagaaagcccagccgcacttttttgaaagaaaagaatgacgaactcttaaaagag
attatttacagagaattacgccgtaacgggcaaattttttacatccataaccacatcgct
agcatttcaaaagtcaaaaccaagctagaagagctcatccctaagcttaaaatcgccatt
ttgcattcccaaattaacgctaataagagcgaagaaatcatgctagagtttgctaagggg
aactatcaggttctattatgcacttctattgtggaatcagggattcatttgcctaacgct
aacacgatcattattgataatgcgcaaaatttcgggctggctgatttgcaccaattaaga
gggcgtgtggggagaggcaaaaaagaaggcttttgttatttcctcatagaagatcaaaaa
agtttgaatgaacaggctttaaaacgcttgctcgctctagaaaaaaattcgtatttgggc
agtggggagagtatcgcttatcatgatttagaaatcagagggggcgggaacttgcttggg
caagatcagagcgggcatattaaaaatatcggttatgcgctctatacgcgcatgcttgag
gatgcgatttatgaattgagtggagggaagaaaaggcttgaaaaaagcgtagaaatccaa
cttggcgtgagcgcttttttaaaccctgaactcattgcaagcgatagtttgaggttggat
ttgtatcgccgtttgagtttgtgtgaaaatacagatgaggtggggcaaatccatgaagaa
atagaagacaggtttggtaaaatggacgatttgagcgctcaatttttgcaaatcattacg
cttaaaattctagccaaccagcttggcatcattaagctttctaatttcaatcaaaacatc
accatcacttataacgatgaacataaagaaagcttaaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcgcgctcaaatttctttaaagcggcgttaa
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