Helicobacter pylori India7: HPIN_00415
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Entry
HPIN_00415 CDS
T01918
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hpn
Helicobacter pylori India7
Pathway
hpn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPIN_00415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpn03021
]
HPIN_00415
Transcription machinery [BR:
hpn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPIN_00415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
WYL_3
MCR_beta_N
Sigma70_r4_2
HTH_25
SieB
Motif
Other DBs
NCBI-ProteinID:
ADU79343
UniProt:
E8QDM7
LinkDB
All DBs
Position
complement(85371..87401)
Genome browser
AA seq
676 aa
AA seq
DB search
MKKKANEEKAPKRAKQEAKAEATQENKTKENNKAKESKIKENKTKESKIKEIKAKEPVPV
KKLSFNEALEELFANSLSDCVSYESIIQISTKVPTLAQVKKIKELCQKYQKKLVSSSEYA
KKLNAIDKIKKTEEKQKVLNEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLSK
DEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDENSV
SDSKKDDDSEEDEENEERKKVVSEKDKKRVEKVQESFKALDKAKKEWLKALEAPIDEKED
ELVRLLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYKLPLF
NDTLIANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLAPNKL
KEILEQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDK
FEHEKGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEP
DLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMRE
DLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKK
LRSPQYGRILRNYLRI
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaagctaacgaagaaaaagcccccaaaagagctaaacaggaagccaaagca
gaagccacacaagaaaataagactaaggaaaacaataaagccaaagagagcaaaattaaa
gaaaataaaaccaaagaaagcaaaatcaaagaaattaaagcgaaagaacctgttcctgtt
aaaaagcttagttttaatgaagcgttagaagaattgttcgctaattccttaagcgattgc
gtttcttatgagtctatcattcaaatcagcacgaaagtccccactctagcccaagtcaaa
aaaatcaaagaattgtgccaaaaataccaaaagaaattagtcagctcttcagaatacgct
aaaaaactcaatgcgattgacaagattaaaaaaaccgaagaaaagcaaaaagttttaaat
gaagaattagaagatggctatgactttttgaaagaaaaggattttttagagtggagcagg
agcgacagcccggtgcgcatgtatttgcgtgaaatgggggatataaaacttttaagcaaa
gatgaagagattgaattgagcaagcaaatccgcttgggcgaagacattattttagacgcg
atctgctcggtgccgtatttgattgattttatctatgcgtataaagacgctttaatcaat
cgtgaacgaagggttaaagagctttttaggagctttgatgatgacgatgaaaatagcgtg
agcgattctaaaaaagacgatgacagcgaagaagatgaagaaaacgaagaaaggaaaaaa
gtcgtttctgaaaaagacaagaagcgtgtagaaaaggttcaagaaagctttaaagcccta
gataaggctaaaaaagaatggctcaaagcccttgaagcccccatagatgaaaaagaagat
gagctagtgcgtttattgaccctagcttacaaacgccaaacgctcaaagacagactctat
gacttagagcctaccagcaaactgattaatgaattggtcaaaacgatggaaaccacttta
aaaagcggtgatgggtttgaaaaagagttgaaacgcttggaatacaaactgcccttattc
aatgacactctcatcgctaaccataaaaaaatccttgctaatatcactaacatgactaaa
gaagatattatcgctcaagtgccagaagcgaccatggtgagcgtgtatatggatctcaaa
aagctttttttgactaaagaagcgagcgaagaaggctttgatttagcccccaacaagcta
aaagaaattttagagcaaatcaaaagagggaaattgatttccgatcgcgctaaaaacaaa
atggctaaatccaatttaaggttggtggtgagcatcgctaaacgattcacaagtagaggc
ttacccttcttggatttgattcaagagggcaatattggcttgatgaaagcagtggataag
tttgagcatgaaaagggcttcaagttttctacctatgcgacttggtggatcaaacaagct
atcagcagagccatagccgatcaagcccgcactatccgcatccccattcacatgattgac
acgattaatcgcatcaataaagtcatgcgtaaacacattcaagaaaccggcaaagagcct
gatttagaagtggtggctgaagaagtgggactttcgttagataaagtgaagaatgtgatt
aaggttactaaagagcctatcagtttggaaaccccagtcggcaatgatgatgacggcaaa
tttggggatttcgtggaagataaaaatatcgtcagctccattgatcacatcatgcgagaa
gatttaaaagcgcaaattgaaagcgttttggatcagttgaatgagcgagaaaaagcggtg
atccgcatgcgttttgggcttttagacgatgaaagcgatcgaactttagaagaaattggc
aaggaattgaatgttactagagaaagggtgcgccagattgaaagctctgcgatcaaaaaa
ttgagaagtccgcaatacgggcgcattttgagaaactatttgcgcatttga
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