Helicobacter pylori 35A: HMPREF4655_20076
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Entry
HMPREF4655_20076 CDS
T01892
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hpo
Helicobacter pylori 35A
Pathway
hpo03420
Nucleotide excision repair
hpo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF4655_20076
03430 Mismatch repair
HMPREF4655_20076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpo03400
]
HMPREF4655_20076
Enzymes [BR:
hpo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF4655_20076
DNA repair and recombination proteins [BR:
hpo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF4655_20076
MMR (mismatch excision repair)
Other MMR factors
HMPREF4655_20076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ADU40246
LinkDB
All DBs
Position
complement(65457..67502)
Genome browser
AA seq
681 aa
AA seq
DB search
MDFEKSILNNLNEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLT
LTFTNKASKEMQERALKLLKNQTLIPPLLCTFHRFGLLFLRQHMGLLKRACDFSVLDSDE
TKTLCKQLKISSFRASISQIKNGMMDLSMQDSECYKAYELYQNALKKDNLVDFDDLLFLS
LKILQDNETIAKETSERYHYIMVDEYQDTNALQLEFLKKLSFTHHNLCVVGDDDQSIYGF
RGADISNILNFSKHFKGAKVVKLETNYRSSAEILACANSLISHNQHRHKKTLQSFKGSHK
SVVCKEYLTQKEESLDVAYQIKALLKKGENLENIAILYRLNGLSRSIEESLNALNIPYRL
IGAVSFYERAEVKDALAFMHLVAKKDDRFFIRRVLNKPSRGLGKITQELIFSLLDGEGLN
LEEALKLGVFKGKLNPKNEYALNKFIAMIGRLREAFEISVERFCARFLEETNLLKSYEKE
DNYEEREGFVKELLSLVKEHFKTNPTHSLLDFLNESILDTHNTENAQKVSCMSVHMSKGL
EFKHVFVIGLEEGFFPHRGFNQESDLEEERRLAYVAITRAKEGLQLSYVKERSYFGRKIS
CSPSVFLEEAKLIKQDNPPKQDFKKDTPIKVGDLIRHKLFGTGRVLGVEKGLSGLCLKIN
CGGNVYDKISVKFVEKVDNGF
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggattttgaaaaaagcattttaaataatttaaacgaagcgcaaaaaattgccgcaagc
cacattcaagggcctttgctgattttagcgggagcggggagcggtaagactaagacttta
acgagccgtttagcgtatttgattggcgcttgtggcgtgcctagcgagaatactttaacg
ctcactttcaccaataaagcgagcaaagaaatgcaagaaagggctttgaaattgttgaaa
aaccaaacccttatcccccccttgctttgcactttccatcgttttggtttgctgttttta
aggcaacacatgggccttttaaaaagagcgtgcgatttttcggtgctagacagcgatgag
acaaaaacgctgtgcaaacagctcaaaatttcaagctttagagccagtatttctcaaatc
aaaaacggcatgatggatttaagcatgcaagatagcgaatgttataaagcgtatgagctt
tatcaaaacgcgcttaaaaaagacaatttagtggattttgacgatttgctttttttaagc
cttaagattttacaagataatgaaaccatcgccaaagaaactagcgagcgctaccattac
attatggtagatgaatatcaagacacgaacgccttgcaattagaatttttgaaaaaattg
agtttcacgcaccataatttgtgcgtggtgggcgatgacgatcagagcatttatggtttt
aggggggctgatatttctaacattttaaatttttccaagcattttaaaggggctaaagtg
gtgaaattagaaaccaactaccgctccagcgctgaaattttagcgtgcgctaactccctg
attagccataaccaacaccgccacaaaaaaacgcttcaaagttttaaaggctcgcataaa
agcgtggtttgtaaagaatatttgacgcaaaaagaagagagcctagatgtggcttatcaa
atcaaagcccttttaaagaagggcgaaaatttagaaaatatcgctattttgtatcgctta
aacgggcttagccgcagcattgaagagagcttgaacgctttgaatatcccctataggctt
attggagcggtgagtttctatgaaagagcagaggttaaagacgctttggcgttcatgcat
ttagtggctaaaaaagacgatcgctttttcatcaggcgcgttttaaacaagccctcaaga
ggccttggcaagatcactcaagagttgattttttctcttttagatggtgagggtttgaat
ttagaggaagccctaaaacttggggtgtttaaaggcaaattaaaccctaaaaacgaatac
gctttgaacaaatttatcgctatgatagggcgtttgagggaggcttttgaaatttcagta
gagaggttttgcgctcggtttttagaagaaaccaaccttttaaaaagctatgaaaaagaa
gacaattacgaagaaagagagggctttgttaaagagcttttaagcttagtgaaagagcat
tttaaaactaaccccacgcattctttactggattttttgaatgaaagcattttagatacc
cataatacagaaaacgcgcaaaaagtgagttgcatgagcgtgcatatgagtaagggatta
gagtttaagcatgtgtttgtgatcgggttagaagaagggtttttcccgcatagggggttc
aatcaagaaagcgatttagaagaagaaaggcgcttggcttacgtagcgatcactagggct
aaagaaggattgcaactctcttatgtcaaagagcgttcgtattttgggaggaaaatttct
tgttcgccctctgtgtttttagaagaagccaagttaatcaagcaagacaacccccctaaa
caagatttcaaaaaagatacgcccattaaagtgggggatttgattaggcataaacttttt
ggcaccggtagggttttaggcgtagaaaaaggcttgagcggtttgtgcttgaaaatcaat
tgcggagggaatgtctatgataaaatctcagtaaaatttgtagaaaaagtggataacgga
ttttga
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