KEGG   Helicobacter pylori 35A: HMPREF4655_20129
Entry
HMPREF4655_20129  CDS       T01892                                 
Symbol
hsdR
Name
(GenBank) type I site-specific deoxyribonuclease, HsdR family
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
hpo  Helicobacter pylori 35A
Brite
KEGG Orthology (KO) [BR:hpo00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:hpo02048]
    HMPREF4655_20129 (hsdR)
Enzymes [BR:hpo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     HMPREF4655_20129 (hsdR)
Prokaryotic defense system [BR:hpo02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   HMPREF4655_20129 (hsdR)
SSDB
Motif
Pfam: SWI2_SNF2 HSDR_N T1R_D3-like ResIII DEAD PcRGLX_3rd AAA_19
Other DBs
NCBI-ProteinID: ADU40299
LinkDB
Position
129782..132757
AA seq 991 aa
MKTEKEVQKQVIETFKSMGYAYLGDLTKSDNENINKESLKAWLVKNQKINDKRWQRIEHE
INKALENDLYEANQKFYELLIYGVKTKISQNEPTQTSWLIDWKDVFKNEFSVAEEVSVKG
SNTKRPDIVLYVNGIALGVLELKNSSVSVESAIRQNLDNQKKEFIRDFFKTIQLVMAGNE
SQGLRYGVIETKEKYYLSWKEEGVQKNLFETIECFLKKERFLEFIHDFLIFDKGQKKCAR
FHQYFAVKKTQEFIHKKEGGIIWHTQGSGKSLTMVWLTQWLRRNRKEARILIVTDRRELD
AQIQGVFEGIGEAIYRADSKKDLLSVLFENKEFFVGSLVHKFDDNDLEDLKKQPVLKEWI
VLVDECHRTQSDKLHNAMKSLLPNAIFIAFSGTPLLKQEKKTSQEVFGNYIHCYKFNEAV
SDKVVLDLNYEARSVDQYVSSPEKLDEYFELKTQNLNDTAKTELKKKWANLQKVFSTKNR
LEHIVQDIVLDMAKLPRLKNGKGNAMLVAESVYNACRYFELFLETELKDKVAVITSYEPN
ITDLKDCGSNESEESYKYRTYCKMLQNFFNEKDEKKALNKTKEFEEEVKKRFINEPSRMK
LLIVVDKLLTGFDAPSLTYLYIDKKMQDHGLFQAVCRVNRLDGEDKDFGCIIDYSDLFDS
LQEAHSDYTNGAFENYEREDIQGLISNKAQKIKKKLEETRDQLSSLCESVKEPKDETGYI
AYFCGSDLEKNAQKRRLFYQLVGAFLRMFVELNNLEKPIYSKEGMQKIKQEAQFYRHLQK
MIGLNSGDSVDLKSYSEDMRRILDAYIKATDSKTLIKIEDQGLCEVLAQMDINDFNKELS
EVFKNESSMAESIANNTRKRIIEKEASDPKYYEKLSSLLNDLINQFREKKLTYLEYLQQI
HNLAKQVIHKEDKNYPKKINTNALKTLYDNLDQNEALALEIDACIRDNKKDGWVGHNQKE
KNLKIALRKIINDEGLLENIFNLAKHIDEYH
NT seq 2976 nt   +upstreamnt  +downstreamnt
atgaaaacagaaaaagaagttcaaaaacaagtcatagaaacttttaaaagcatgggctat
gcgtatttaggggatttaacaaagagcgataatgaaaacattaataaagaaagcttgaaa
gcatggctagttaaaaaccaaaaaatcaatgataaaaggtggcaaagaattgagcatgaa
atcaataaggctttagaaaacgatttatacgaagcgaatcaaaaattttacgagctttta
atttatggcgtgaaaactaaaataagccagaatgaaccaacccaaacaagttggctcatt
gattggaaagatgtttttaagaatgaatttagcgtggctgaagaagtgagcgttaaaggg
tcaaacacgaaacggccggatatagtgctttatgttaatgggatcgctttaggggtgcta
gaattaaaaaattccagcgtgagcgtagaaagcgctatcaggcaaaatttagacaaccag
aagaaagaatttattagagatttttttaaaacgatccaattggttatggcgggcaacgaa
agtcaagggctaagatatggcgtcatagaaactaaagaaaaatactacctttcttggaaa
gaagagggcgttcaaaaaaatttgtttgagacgattgaatgctttttaaagaaagaaagg
tttttagaatttatccatgattttttgatttttgataaggggcaaaagaaatgcgctagg
ttccatcagtattttgcggttaaaaaaacgcaagaatttatccacaaaaaagaagggggg
attatttggcacacgcaaggcagcggtaagagccttactatggtgtggcttactcaatgg
ctaagaaggaatagaaaagaagcgagaatcttaatcgttacagacaggagggaattggac
gctcaaattcaaggcgtgtttgaaggaataggcgaggctatttatcgcgccgacagcaag
aaggatttattgagcgtgctgtttgaaaataaggaattttttgtcggatcgcttgtgcat
aaatttgatgacaacgacttagaagatttaaaaaagcaacctgttttaaaagaatggatt
gttttagtggatgaatgccacagaacccaaagcgacaaattgcacaacgccatgaaaagc
ctgctccctaatgcgatttttatcgcttttagtggcacgcctttgttgaaacaagaaaaa
aagacaagccaggaagtgtttgggaattatatccattgctataaatttaatgaagccgtt
agcgataaagtggtgttagatttaaattatgaagccaggagcgtggatcaatatgtcagt
agccctgaaaagctagacgaatattttgaattaaaaacccaaaacttgaatgatacggct
aaaacagagcttaaaaagaaatgggctaatttgcaaaaagttttttccactaaaaacaga
ttggaacacattgtgcaagatattgtattggatatggcaaaactcccaagattaaagaat
ggaaaggggaatgccatgctggtggctgaaagcgtgtataacgcatgccggtattttgaa
ctctttttagaaacagaattaaaggataaggtggctgtgatcacaagctatgaacccaat
attaccgatcttaaagattgcgggagcaatgagagcgaagagagttacaaataccgcact
tattgcaaaatgttgcaaaacttttttaatgaaaaagatgagaaaaaagcccttaataag
accaaagagtttgaagaagaagttaaaaagcgttttattaatgagccttctagaatgaag
ctattgatcgtggtggataagctattgaccggttttgatgcgccaagcctcacttattta
tacattgataagaaaatgcaagatcatgggctttttcaagcggtgtgtagggtgaataga
ctggatggcgaagataaggattttggctgtatcatagattatagcgatttgtttgacagc
ctgcaagaagcgcacagcgattacactaatggggcgtttgaaaactatgaaagagaagac
attcaagggcttatctctaacaaagcccaaaagattaagaaaaaattagaagagactaga
gatcaattgagttcgctttgtgaaagcgtgaaagagccaaaagatgaaacgggttatatc
gcttatttttgcgggagcgatttagaaaaaaacgctcaaaaaaggcggttgttttaccag
cttgtgggcgcgtttttaagaatgtttgtggaattgaacaatctagaaaagcccatttat
tctaaagaaggaatgcaaaaaatcaaacaagaagcgcaattttataggcatttacaaaag
atgattggcttaaatagtggggatagcgtggatttaaaaagctatagcgaagacatgcgc
aggattttagacgcttacattaaagccacagatagcaagacgctaatcaaaatagaagat
caagggctgtgcgaagttttagcccaaatggatattaatgattttaataaggagctgtct
gaagtgtttaaaaatgaaagctctatggcagaaagcatcgctaacaacactagaaaacgc
attatagaaaaagaagcgagcgatcctaagtattacgaaaaattatcttcgcttttaaac
gatttgatcaaccagtttagagaaaagaaattaacctatttagaatacttgcaacaaatc
cacaatttagccaagcaagttatccataaagaagataaaaattaccctaaaaagatcaac
actaacgctttaaaaaccctctatgataatttagatcaaaatgaagccttagccctagaa
atagacgcatgcataagggataataaaaaagatggttgggtggggcataaccaaaaagaa
aaaaaccttaaaatcgctttaagaaaaatcataaacgatgagggtttgttggaaaacatc
tttaatttagccaaacacatagatgagtatcattaa

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