Helicobacter pylori 35A: HMPREF4655_20146
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Entry
HMPREF4655_20146 CDS
T01892
Name
(GenBank) exonuclease, DNA polymerase III, epsilon subunit family
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hpo
Helicobacter pylori 35A
Pathway
hpo03030
DNA replication
hpo03430
Mismatch repair
hpo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF4655_20146
03430 Mismatch repair
HMPREF4655_20146
03440 Homologous recombination
HMPREF4655_20146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpo03032
]
HMPREF4655_20146
03400 DNA repair and recombination proteins [BR:
hpo03400
]
HMPREF4655_20146
Enzymes [BR:
hpo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HMPREF4655_20146
DNA replication proteins [BR:
hpo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HMPREF4655_20146
DNA repair and recombination proteins [BR:
hpo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HMPREF4655_20146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
ADU40312
LinkDB
All DBs
Position
complement(147813..148676)
Genome browser
AA seq
287 aa
AA seq
DB search
MSDSLLHKDIQALIARLKHQDLSLGMLEKSLSRLIYDEINLEYLKACGLNFVETSENLIT
LKNLKTPLKDEVFSFIDLETTGSCPLKHEILEIGAVQVRGGGIINRFETLVKVKSVPDYI
AELTGIAYEDTLNAPSVHEALQELRLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPLLNL
KLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALASYKLFEICLLNLPSYIKT
TMDLIDFSKCANTLIKRPPRARHQETLAPFPLFENTKSLLNIIKATS
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacagcctcttgcataaagatattcaagccctaatcgctcgcttaaagcaccag
gatttaagcttaggcatgctagaaaaatcgctctctcgccttatttatgatgaaatcaat
ttggaatatttaaaagcgtgcgggcttaatttcgtagaaacgagcgaaaatttaatcacg
ctcaaaaaccttaaaaccccccttaaagatgaggttttttcctttattgatttagagacc
actggttcttgccccctaaaacatgagattttagaaattggagccgtgcaagtaaggggg
gggggaatcatcaatcgttttgaaacccttgtgaaagtcaaaagcgtgcctgattatatc
gctgagcttacaggcatcgcttatgaagacaccctaaacgctccaagcgtgcatgaagct
ttgcaagaattacggctttttttaggcaatagcgtgtttgtagcccataacgctaatttt
gattacaactttttagggcgttattttgtagaaaaattgcattgccccttattgaattta
aagctttgcactttggatttatccaaacgagccattttgtccatgcgttattctttgagc
tttttaaaagagcttttagggtttggtatagaagtcagccatagagcctatgcggacgct
ttagcgagctataagctctttgaaatatgcttattaaacttgcccagctacatcaaaaca
acaatggatttgattgatttttccaaatgcgctaacaccttgatcaaaagacccccaaga
gccagacaccaagagactctagcgccatttcctctttttgagaatacaaagagtttgtta
aatatcataaaagcaaccagttaa
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