Helicobacter pylori 35A: HMPREF4655_20491
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Entry
HMPREF4655_20491 CDS
T01892
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hpo
Helicobacter pylori 35A
Pathway
hpo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF4655_20491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpo03019
]
HMPREF4655_20491
03009 Ribosome biogenesis [BR:
hpo03009
]
HMPREF4655_20491
Enzymes [BR:
hpo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HMPREF4655_20491
Messenger RNA biogenesis [BR:
hpo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMPREF4655_20491
Ribosome biogenesis [BR:
hpo03009
]
Prokaryotic type
rRNA helicases
HMPREF4655_20491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
P-loop_SecA
AAA_30
AAA_22
Helicase_RecD
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ADU40626
LinkDB
All DBs
Position
476583..478061
Genome browser
AA seq
492 aa
AA seq
DB search
MEFNQPPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV
IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVC
VYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLD
DIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN
EHERAKAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSI
MAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL
VTPLEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHDARVSEAIISLYEQLTEIFEPS
QLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKPSNKKTHQHEQARSFKKGQHKDRYP
KTNHHSKKPKRR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaatcaaccaccactccctacagaaattgatgatgacgcttaccataagccg
agttttaatgatttgggcttaaaagaatcggttttaaaatccgtttatgaagccggtttc
acttccccaagccccattcaagaaaaggccattccggctgttttgcaaggccgagatgtc
atcgcgcaagcccaaacaggcacaggaaaaaccgccgctttcgctttgcccattatcaac
aaccttaaaaacaaccacaccatagaggccttagtgatcacgcctactagagaattagcc
atgcaaattagcgatgagattttcaaattgggcaaacacactaggactaaaaccgtgtgc
gtgtatggaggccagagcgttaaaaagcaatgcgaatttattaagaaaaacccccaagtg
atgattgctacaccaggaaggttattggatcatttaaaaaacgaacgcatccataaattt
gtgcctaaagtggtcgttttagatgaaagcgatgaaatgctggatatggggtttttagac
gatattgaagagatttttgactatctccctagcgaagcgcagattttgcttttttcagcc
acgatgccagagccgattaaaagactagcggataagattttagaaaaccctattaaaatc
catatcgctccttctaatatcactaacactgacatcacccaacgcttttatgtgatcaat
gagcatgagagagctaaagcgatcatgcgccttttagacacccaagcgcccaaaaagagc
attgttttcacgcgcaccaaaaaagaagccgatgaattgcaccaattccttgcttctaaa
aattacaaaagcaccgctttgcatggggatatggatcaaagggatcggcgctcttctatc
atggcgtttaaaaaaaatgacgctgatgtgttggtggctacggatgtggcgagccgtggg
ttagacattagcggtgtaagccatgtgtttaattaccacttgcccctaaataccgagagt
tatatccatcgcatcgggagaaccgggcgagcgggcaaaaaaggcatggcgatcacttta
gtaacccccttagaatacaaagagcttttacgcatgcaaaaagaaattgattcagagatt
gaactttttgagatccccaccattaacgaaaaccagatcatcaaaaccttacatgacgct
agagtgtctgaagcaatcatcagtctttatgaacagcttaccgaaatttttgagccgtct
caattggttttaaaacttttgagtttgcagtttgaaacgagcaaaattggcttaaaccag
caagaaattgatgcgattcaaaaccctaaagaaaaaacgccaaaaccctctaacaaaaaa
acgcaccagcatgagcaagcgcgttctttcaaaaagggtcagcacaaagacagataccct
aaaacaaaccaccattctaaaaaacccaaacgccgttaa
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