KEGG   Helicobacter pylori 35A: HMPREF4655_20750
Entry
HMPREF4655_20750  CDS       T01892                                 
Symbol
hsdR
Name
(GenBank) type I site-specific deoxyribonuclease, HsdR family
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
hpo  Helicobacter pylori 35A
Brite
KEGG Orthology (KO) [BR:hpo00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:hpo02048]
    HMPREF4655_20750 (hsdR)
Enzymes [BR:hpo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     HMPREF4655_20750 (hsdR)
Prokaryotic defense system [BR:hpo02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   HMPREF4655_20750 (hsdR)
SSDB
Motif
Pfam: EcoR124_C T1R_D3-like SWI2_SNF2 HSDR_N ResIII DEAD
Other DBs
NCBI-ProteinID: ADU40870
LinkDB
Position
726959..729976
AA seq 1005 aa
MSYEIIAESNESTVIAEYHSDNEKKSAYESEAELERAFIKLLQKQGYEFKNIYKEQELKD
NLKEQLEKLNDYHFTPKEWEILYSQFIANKNDDYKAKTRKIQEDPIFNLTLENGKTKNIK
IIDKKNIHKNALQVIHQYSAKGGKYENRYDVSVLVNGLPLVHVELKRRGVAIREAFNQIK
RYKRDSFSAEDGLFDFVQIFVISNGTSSKYYSNTTRIAQLEKNNKADTFEFTNYWADSKN
NNIEDLMDFARSFFAKHSLLNVLTRYCVFTSDEVLLVMRPYQIVAAERILEKIKAAQNSK
TYGKNQSKGFIWHTTGSGKTLTSFKSAALAKELESVSKVLFVVDRKDLDYQTMKEYDKFQ
KDCANSNTSTKILKEQLENPNAKIIITTIQKLDKFVKSHLKGHAIFNEEVVMIFDECHRS
QLGSMHQAIIKAFKKYHLFGFTGTPIFAQNCDKNNPLGTTEQKFGDCLHQYTIIDAIRDK
NVLPFRVEYHNTLKAKEGIIDNKVRAVDEKNALLDTRRIKEIAKCILERFNQATKNKKFN
SILACSSIEALKKYYMAFKEEKHDLKIATIFSYSANEELDALEDENNESACRLDKSSRDF
LEGAIADYNGMFKTSFDTSDQKFQSYYKDLSQKVKDREIDLLMVVNMFLTGFDATRLNTL
WVDKNLKYHGLIQAFSRANRILNSVKTHGNIVCFRDLEQDLNDALMLFGNKDAKSIALLR
KYEDYLKGYTDNNREYEGYEGLIGRLLREFPLKEPIISESQKKDFIKLFGKILKLENILN
SFENFKKDDYINPRDFQDYQSKYLDFYDEMRPEKGRDKEEINDDLIFEIELIKQVEVNID
YILNLIEEFAKEHDLEIQGVKTKIEPIINSSIELRNKKDLIMDFIDKYNKDQEVHAYFQD
YIHQKREEEFQKLIEENRLNEEKAYSFMQHAFKGGEISFSGTEFPKIIEEKPSRFDKNSR
YQEVKEKVAASLSRFFHRFCDLTSSIFKKNGVKKDKVKKNEVNEK
NT seq 3018 nt   +upstreamnt  +downstreamnt
atgagctatgaaattatcgcagaaagcaatgaaagcaccgtgatagccgagtatcatagc
gataatgaaaagaaaagcgcttatgagagcgaagcagagctagaaagggcgtttattaag
cttttacaaaaacaaggctatgaattcaaaaacatctacaaagaacaagaattaaaagac
aatttaaaagagcagttagaaaagcttaacgattatcatttcacgcctaaggaatgggag
attctttattctcaattcatcgctaataaaaacgatgactataaggctaaaacgagaaaa
atccaagaagatccgatttttaacctaacccttgagaacgggaaaaccaaaaacattaaa
atcattgataagaaaaatatccataaaaacgccttgcaagtgatccaccaatacagcgct
aaaggggggaagtatgagaaccgctatgatgtgagtgtccttgtgaatggcttgccttta
gtgcatgtggaattgaaaagaagaggcgtggcgatcagagaggcgttcaatcaaatcaag
cgctataaaagggatagttttagcgctgaagacgggctttttgatttcgtgcagattttt
gttatcagtaacggcacgagctctaaatactattcaaacaccacaagaatagcccagttg
gaaaaaaacaataaagccgatacttttgaattcacgaattattgggcggacagcaaaaat
aacaatattgaagatttaatggattttgcccgatcgttttttgcaaagcatagccttttg
aatgttttaacgcgctattgcgtttttacgagcgatgaggttttattggtgatgcggcct
tatcaaatcgtggcggccgaaaggattttagaaaaaatcaaagccgcgcaaaatagtaaa
acttatgggaaaaatcaaagcaaaggctttatctggcacacgacagggagcggtaaaacc
ttaacgagctttaaaagcgcggcgttggctaaagaattagagagcgtttcaaaagtcttg
tttgtggtggatagaaaggatttggactatcaaactatgaaagaatacgataaattccaa
aaagattgcgctaattccaacacaagcaccaagattttaaaagaacagcttgaaaaccct
aacgctaaaatcattatcaccacgatccaaaaattagacaaattcgttaaatcccacctt
aaagggcatgcgatctttaatgaagaagtggtgatgatttttgatgaatgccacaggagt
cagttaggctccatgcatcaagccatcattaaagcgtttaaaaaataccacctttttggg
ttcacaggcacgcccatttttgcacaaaattgcgacaaaaacaacccgttaggcacgaca
gagcagaaatttggggattgcctccaccaatacactattattgatgcgatcagggataaa
aacgttttgccttttagagtggaataccacaacacccttaaagctaaagagggcattata
gataataaggttagagcggttgatgaaaaaaacgcccttttggataccaggaggatcaaa
gaaatcgctaaatgcattttagagcgcttcaatcaagccactaaaaataaaaaattcaat
tccattctggcatgctctagtatagaagcgctgaaaaaatactacatggcttttaaagaa
gaaaaacacgaccttaaaatcgctaccatttttagctatagtgctaatgaagaacttgat
gcgctagaagatgaaaacaatgaaagcgcttgccggctagacaaaagctcaagggatttt
ttagagggcgcgattgcggattataatgggatgtttaaaacttcttttgacacttcggat
caaaaattccaaagctattataaggatctttctcaaaaagtaaaggatcgtgaaatcgat
cttttaatggtggtgaacatgttccttactgggtttgacgctacaagactcaacaccctt
tgggtggataaaaacctcaaataccatgggctaattcaggctttttcacgcgcaaaccgc
attttaaatagcgttaaaacgcatgggaatatcgtgtgttttagggatttagagcaggat
ttaaatgacgctctcatgctttttggcaacaaggacgctaaatctattgcgctattaagg
aaatatgaagattatttgaaaggctacacggataataatagagaatacgagggctatgag
ggtttgattggaaggcttttaagagaatttcccttaaaagagccaatcatttcagaaagc
cagaaaaaggatttcattaagctttttggcaagattttgaaattagaaaatattttaaac
agctttgaaaattttaaaaaagacgattacatcaacccgagggattttcaagactatcaa
agcaaataccttgatttttacgatgaaatgaggccagaaaaggggagggataaagaagag
attaacgacgatttgatttttgaaattgaactcattaagcaagtggaagtcaatattgat
tatattttgaatttgattgaagagttcgctaaagagcatgatctagaaattcaaggcgtt
aaaaccaaaatagagccgatcatcaattccagcatagagctaaggaataaaaaagatttg
atcatggatttcattgacaaatacaacaaagatcaagaagtccatgcgtattttcaagat
tacatccaccaaaaaagagaagaggaattccaaaaactcatagaagaaaaccgcttgaat
gaagaaaaagcctattcgttcatgcagcatgcctttaaagggggcgaaattagcttcagc
gggacggaatttcctaaaatcattgaagaaaaaccctccaggtttgacaaaaattcgcgc
tatcaagaggtgaaagaaaaagtcgctgcaagcctttctcgttttttccaccgcttttgt
gatctcactagttctatatttaagaaaaatggggttaaaaaagataaggttaaaaaaaat
gaggttaatgaaaaatag

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