Helicobacter pylori 35A: HMPREF4655_20888
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Entry
HMPREF4655_20888 CDS
T01892
Symbol
dnaX
Name
(GenBank) DNA polymerase III, subunit gamma and tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
hpo
Helicobacter pylori 35A
Pathway
hpo03030
DNA replication
hpo03430
Mismatch repair
hpo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF4655_20888 (dnaX)
03430 Mismatch repair
HMPREF4655_20888 (dnaX)
03440 Homologous recombination
HMPREF4655_20888 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpo03032
]
HMPREF4655_20888 (dnaX)
03400 DNA repair and recombination proteins [BR:
hpo03400
]
HMPREF4655_20888 (dnaX)
Enzymes [BR:
hpo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HMPREF4655_20888 (dnaX)
DNA replication proteins [BR:
hpo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HMPREF4655_20888 (dnaX)
DNA repair and recombination proteins [BR:
hpo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HMPREF4655_20888 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
AAA
AAA_22
RuvB_N
AAA_5
AAA_14
RCF1-5-like_lid
DNA_pol3_gamma3
EH_Signature
AAA_30
AAA_assoc_2
DEAD
AAA_19
TIP49
AAA_lid_RFC1
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADU40993
LinkDB
All DBs
Position
853089..854768
Genome browser
AA seq
559 aa
AA seq
DB search
MQVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARAL
MCEEGPKAVPCDTCTQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKI
FIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENS
VISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLG
AIDRSVLEDFFQSLINQDEARLQERYAILENYETESVLEEMMLFLKAKLLSPDTYSILLI
ERFFKIIMSGLSLLKEGANASFVLLLLKMKFKEALKLKALDDAILELEQSKESVLKPLNQ
NANAFKQEPESAEKIEKPEKRESAETPQTSMLSAKDRIFHNLFKQVQTLVYERNYELGAV
FEKNIRFIDFDSQTKTLTWESLATHKDKELLRERFKIVKSIVDGVFGKGENIKIALKNHS
ENKSALEEIKFKFPSLKPKPTTETTAEMKEKETKENDTKEIQETQPKETPTALQEFMANH
SDLIEEIKSEFEIKSVELL
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcaagttttagcgttaaaataccgccccaaacattttagcgagctagtcggtcaagag
agcgtggctaaaacgctttctttagccctagacaaccagcgtttggctaacgcttattta
ttcagcgggttaagaggttcaggcaaaaccagttcttctaggatttttgctagggcttta
atgtgtgaagaagggccaaaagccgtgccttgcgatacttgcacccaatgccagagcgct
ttaaacaaccaccatatagatattatagaaatggacggagcgtctaatagggggattgat
gatgtccgtaatctcatagagcaaacgcgctacaaaccaagctttgggcgttataaaatc
tttatcattgatgaagtgcatatgttcaccaccgaagcgtttaacgcgcttttaaagact
ttagaagagcctcctagccatgtgaaattccttttagcgacaacggacgccttgaaattg
cccgctaccatactcagccgcacccagcatttcaggtttaaaaaaatccctgaaaattct
gttatttctcatttaaaaaccattttagaaaaagaacaagtgagttatgaaacaagcgcg
ttagaaaaactggctcacagcgggcaagggagcttaagagatacgatcactcttttagag
caagccatcaattattgcgataacgctatcacagaaagcaaagtggctgaaatgttagga
gcgattgacaggagcgttttagaggatttttttcaaagcctaatcaaccaagatgaagcg
cgattgcaagagcgttatgctattttagaaaattatgaaaccgagagcgttttagaagaa
atgatgctttttttgaaagcgaaattattaagccctgatacttattccatccttttaata
gagcgcttttttaaaatcattatgagcggtttgagccttttaaaagaaggggctaatgcc
agttttgtgctgttgctattgaaaatgaaattcaaagaagctttgaaactcaaagcccta
gacgatgcgattttggaattagagcaaagtaaagaaagcgttttaaagcccttaaaccaa
aacgctaacgcctttaaacaagaacccgaaagcgcagagaaaatagaaaagccagaaaaa
agagaaagtgcagaaaccccgcaaacctccatgctttcagccaaagatcgcatttttcac
aaccttttcaaacaagttcaaacattggtttatgagcgcaattatgaattaggggcggtg
tttgaaaaaaatatccgtttcattgattttgacagccaaactaaaaccttgacttgggag
tctttagctacccataaagataaagagcttttgagagagcgttttaaaatcgtgaaaagc
atcgttgatggggtttttggcaagggcgaaaatatcaaaatcgctttgaaaaatcattca
gaaaataaaagtgctttagaagaaattaagtttaaattcccctctttaaagcccaaacca
accaccgaaacgacggctgaaatgaaagaaaaagaaactaaagaaaacgacactaaagag
attcaagaaacccaaccaaaagaaacccctacagccttgcaagaattcatggctaaccat
tctgatctcattgaagagattaagagcgagtttgaaatcaaaagcgtggaattgttatga
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