Helicobacter pylori 35A: HMPREF4655_21054
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Entry
HMPREF4655_21054 CDS
T01892
Name
(GenBank) CagA exotoxin
KO
K15842
cytotoxicity-associated immunodominant antigen
Organism
hpo
Helicobacter pylori 35A
Module
hpo_M00564
Helicobacter pylori pathogenicity signature, cagA pathogenicity island
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CagA_N
CagA
Motif
Other DBs
NCBI-ProteinID:
ADU41149
LinkDB
All DBs
Position
complement(1035429..1038959)
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AA seq
1176 aa
AA seq
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MTNETIVQTTTPDQTLNQTDFVPQRFINNLQVAFIKVDNAVASFDPDQKPIVDKNDRDNR
QAFEKISQLREEYANKAIKNPTKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQ
RYQIFTSWVSLQKDPSKINTQQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ
IRSDEKFMGVFDESLKARQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPMPN
VEQNLATTTTDIQGLPPEARDLLDERGNFSKFTLGDVEMLDVEGVADKDPNYKFNQLLIH
NNALSSVLMGSHSSIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLNN
GSGLVIAGNENGIKNPSFYLYKEDQLTGLKQAMSQEEIQNKVDFMEFLVQNNAKLNNLSE
KEKEKFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGK
KQDKALDGETKTTLQGSLKYDGVMFVDYSNFKYTNASKSPDKGVGATNGVSHLEANFSKV
AVFNLPNLNNLAITNHIRRDLEDKLLAKGLSPQEANKLIKDFLNGNKEMVGKVLNFNKAV
AEAKNTGNYGEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKI
FALINKEASKEARAAAFDPNLKGIRSELSDKLENINKNLKDFGKSFDELKNGKNNDFSKA
EETLKALKDSVKDLGINPEWISKIENLNAALNDFKNGKNNDFSKVTQAKSDLENSIKDVI
INQKITDKVDNLNQAVSETKLTGDFSKVEQALAELKSLSFDLGKNSDLQKSVKNGVNGTL
VGNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNSTEPIYAKVNKKKTGQAAS
PEEPIYAQVAKKVSAKIDQLNEATLAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIY
ATIDFDETNQAGFPLRRSAAVNDLSKVGLSREQELTRRIGDLNQAVSEAKTGHFDNLEQK
IDELKDSTKKNALKLWVESAKQVPTGLSAKLDNYATNSHTRINSNVQSGTINEKATGVLT
QKNPEWLKLVNDKIVAHNVGSAHLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSS
FVQFLTNTFSTGSYSLMKANVEHGVKNTTKSGFQKS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgactaatgaaaccattgttcaaacaacaacaccagatcaaacactaaaccaaacggat
tttgttccgcaacgatttatcaataatcttcaagtagcttttattaaagttgataacgct
gtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaatgatagggataacagg
caagcttttgagaaaatctcgcaactaagggaagaatacgccaataaagcgatcaaaaat
cccaccaaaaagaatcagtatttttcagactttatcaataagagcaatgatttgatcaac
aaagacaatctcattgctgtagattcttccgtagagagctttcggaaatttggggatcag
cgttaccaaatttttacgagttgggtgtcccttcaaaaagatccgtctaaaatcaacacc
caacaaatccgaaattttatggaaaatatcatacaaccccctatctctgatgataaggaa
aaagcagagtttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaa
atccgatcggatgaaaaattcatgggcgtgtttgatgaatctttgaaagcaaggcaagaa
gcagaaaaaaatgcagagcctgctggtggggattggcttgatatttttttatcatttgtg
tttaacaaaaaacaatcttccgatctcaaagaaacgctcaatcaagagccaatgcccaat
gttgaacaaaatttagccactaccaccaccgacatacaaggcttaccgcctgaagctaga
gatttgcttgatgaaaggggtaatttttctaaattcactcttggtgatgtggaaatgttg
gatgttgagggagtcgctgataaggatcccaattacaagttcaatcaattattgatccac
aataacgctctatcttctgtgctaatggggagtcatagtagcatagaacctgaaaaagtt
tcattattgtatggggataatggtggccctgaagctaggcatgattggaacgctaccgtt
ggttataaaaaccaacaaggcaacaatgtggccacactcattaatgcgcatcttaataac
ggcagtgggttagtcatagcgggtaatgaaaatgggattaaaaaccctagcttctatctc
tataaagaagatcaactcacaggtttgaaacaagcaatgagtcaagaagagatccaaaac
aaagtggatttcatggaatttcttgtgcaaaacaatgctaaactaaataacttgagcgag
aaagagaaagaaaaattccaaactgagattgaaaatttccaaaaagaccgtaaggcttat
ttggacgctctagggaatgatcacattgcttttgtttctaaaaaagacccaaaacattta
gctttggttactgagtttggtaatggggaagtgagctatactctcaaagattatgggaaa
aaacaagataaagctttagatggggagacaaaaaccactcttcaaggtagcctaaaatat
gatggcgtgatgtttgttgattattctaatttcaaatacaccaacgcctccaagagtcct
gataagggcgtgggcgctacgaatggcgtttcccatttggaagcaaattttagcaaagta
gctgtctttaatttgcctaatttaaataatctcgctatcactaatcatataaggcgagat
ttagaagataaattgttggctaaaggattgtccccacaagaagctaataagctcatcaaa
gactttttgaacggcaacaaagaaatggttggaaaagttttaaacttcaataaagctgta
gctgaagctaaaaacacaggcaattatggcgaagtgaaaaaagctcagaaagatcttgaa
aaatctctaaggaaacgagagcatttagagaaagaagtagcgaaaaaattggagagcaga
aacgacaacaaaaatagaatggaagcaaaagctcaggctaacagccaaaaagataagatt
tttgcgttgatcaataaagaggctagtaaggaagcaagagcggccgctttcgatccgaat
cttaaaggcattaggagcgaattgtctgataaacttgaaaatatcaacaagaatttgaaa
gactttggcaaatcttttgatgaactcaaaaatggcaaaaataatgatttcagcaaggcg
gaagaaacgctaaaagcccttaaagactcggtgaaagatttaggcatcaatccagaatgg
atttcaaaaattgaaaaccttaatgcagctttgaatgatttcaaaaatggcaaaaataat
gatttcagcaaggtaacacaagcaaaaagcgaccttgaaaattccattaaggatgtgatc
atcaatcaaaagataacggataaagttgacaatctcaatcaggctgtatcagagactaaa
ttaacaggcgatttcagtaaggtagagcaagccctagccgaactcaaaagcttgtcattt
gatcttggaaaaaattctgatctacaaaaatccgttaaaaatggtgtaaatggaacccta
gtcggtaatgggttgtctaaaacagaagccacaacgctcaccaaaaatttttcggacatc
aggaaagaattgaacgagaaattatttggaaattccaataacaataataatggactcaaa
aacagcacagagcctatttatgctaaagttaataaaaagaaaacaggacaagcagctagc
cctgaagagcccatttacgctcaagttgctaaaaaggtgagtgcaaaaattgaccaactc
aacgaagctacattagcaataaatagaaaaattgaccggattaacaaaattgcatcagca
ggtaaaggagtgggcggtttcagtggagcagggcgatcagctagccctgaacccatttac
gctacaattgattttgatgagacaaatcaagcaggcttccctttgagaagaagtgctgca
gttaatgatctcagtaaagtagggctttcaagggaacaagaattgactcgtagaattggc
gatctcaatcaggcggtatcagaagctaaaacaggtcattttgacaacctagaacaaaag
atagatgaactcaaagattctacaaaaaagaatgctttgaagctatgggttgaaagcgcg
aaacaagtgcctactggtttgtcagcgaaattggacaattacgctactaacagccacaca
cgcattaatagcaatgtccaaagtggaacaatcaatgaaaaagcgaccggtgtgctaacg
caaaaaaaccctgagtggctcaagctcgtgaatgataagatagttgcacataatgtggga
agcgctcatttgtcagagtatgataaaattggattcaaccaaaagaatatgaaagattat
tctgattcgttcaagttttccaccaagttgaacaatgccgtaaaagacattaagtctagc
tttgtgcaatttttaaccaatacattttctacaggatcttacagcttgatgaaagcaaat
gtggaacatggagtcaaaaatactacaaaaagtggtttccaaaaatcttaa
DBGET
integrated database retrieval system
