Helicobacter pylori P12: HPP12_0342
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Entry
HPP12_0342 CDS
T00786
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hpp
Helicobacter pylori P12
Pathway
hpp03410
Base excision repair
hpp03430
Mismatch repair
hpp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HPP12_0342 (recJ)
03430 Mismatch repair
HPP12_0342 (recJ)
03440 Homologous recombination
HPP12_0342 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpp03400
]
HPP12_0342 (recJ)
DNA repair and recombination proteins [BR:
hpp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HPP12_0342 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HPP12_0342 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPP12_0342 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Fe-S_biosyn
GLUCM-like_C
Motif
Other DBs
NCBI-ProteinID:
ACJ07499
UniProt:
B6JKS1
LinkDB
All DBs
Position
complement(351177..352727)
Genome browser
AA seq
516 aa
AA seq
DB search
MKQKLKAQIKERVASIAYNEKGFPSPFLFKDLKKAALKIIEAMRTNTEILVVGDYDADGV
ISSAIMAKFFESLNYKHVRIAIPNRFMDGYGISKKFLEKHHAPLIITVDNGINAFEAARF
CKEKNYTLIITDHHCLNNDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHKLLG
KEKSRSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFNIAPLINSAGRMQDAKMALDFLSANNFQDGYSLYERLKACNLKRKMIQQQVF
EEAFKHAMVGEKIIIAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSGRSSPN
IDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKVLPFCEKEPPLTLK
LKDIDRELLEIIEAGEPYGQENPEPLFQAKNLEVIEEKIIKESHQVLRFKDKECVKEAIY
FNAERFLKAGEKVSVLFSVELDECSNEPKMFVKSLL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaagcttaaagctcaaatcaaagagcgagtggcttctatcgcttataatgaa
aaagggtttcctagcccctttttatttaaagacttgaaaaaagccgcgctcaaaatcata
gaagccatgcgcacaaacacagaaattttagtggtgggcgattatgacgctgacggcgtg
attagctctgctatcatggcaaaattctttgaaagcctgaactataagcatgtccgcatt
gcaatccctaatcgcttcatggatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataatgggattaacgcctttgaagccgcgcgattt
tgcaaggaaaaaaattacacccttatcattacggatcaccattgcttaaataatgatgaa
gtcccagacgcttatgcggtgatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgtggggcgttggtagcgttttatttgtgctatggaatccacaagcttttaggc
aaagaaaaaagccgttctagtgagttattatgcttagcgggcgtggcgactattgctgat
atgatgcctttgactttttttaaccgctttttagtttctaaagccttgtattttttgcaa
aaagaatccttaggcgcgatggggtttttgcgccaaagagaagtttttagaaaacgctct
ttaaaagcgagcgatatttcttttaacatcgcccccttaatcaactccgcagggcgcatg
caagacgctaaaatggctttagattttttaagcgcgaataattttcaagatggctattct
ttgtatgaacgcttgaaagcatgcaatttgaagcgtaaaatgatccaacagcaggttttt
gaagaagcctttaagcatgcgatggttggagaaaaaatcatcatcgcttttaaggataat
tggcatgagggcgtgcttgggattgtggcttcaaaattagtggaagccactcaaaagcca
agcttggtttttacctttaaagaaggggtgtataaagggagcggacgcagttctccaaat
attgatctcattgacgctttgaatggggtttcttctttgttgctcggctatgggggtcat
aggcaagcttgcggtttgagcgttggaaaaaacaatatcatctcgctctttgaaacttta
gaaaattttgattttaaagtcttgcctttttgtgaaaaagaaccccctttaacgctcaaa
ttaaaagacattgacagagagcttttagagatcatagaagcgggcgaaccttatgggcaa
gaaaaccctgaacctttattccaagcaaaaaatttagaagtcatagaagaaaaaatcatt
aaagaaagccaccaggttttgcgttttaaggataaagaatgcgttaaagaggcgatttat
tttaacgctgagcggtttttgaaagcgggcgaaaaggtgagcgtgctttttagcgtggaa
ttagatgagtgctctaatgagcctaaaatgtttgttaaaagtttgttgtag
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