| Entry |
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| Symbol |
rpoB
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| Name |
(GenBank) DNA-directed RNA polymerase beta subunit
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| KO |
| K13797 | DNA-directed RNA polymerase subunit beta-beta' [EC:2.7.7.6] |
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| Organism |
hpp Helicobacter pylori P12
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:hpp00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPP12_1163 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:hpp03021]
HPP12_1163 (rpoB)
03400 DNA repair and recombination proteins [BR:hpp03400]
HPP12_1163 (rpoB)
Enzymes [BR:hpp01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPP12_1163 (rpoB)
Transcription machinery [BR:hpp03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPP12_1163 (rpoB)
DNA repair and recombination proteins [BR:hpp03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPP12_1163 (rpoB)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(1244539..1253163)
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| AA seq |
2874 aa
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKDGKESGIEKVFKSIFPIQ
DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMEFDLKDPQGKIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLA
EPVMVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIQSFSADSESLKL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEK
IIARDSWGAIKANRAGVVEKIDAKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPI
VKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDIFTS
THIYEKEVDARELKHGAEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYE
EEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASIN
RFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIASMLEDKTRDFAKELRAKMLEIANAINEKDPLTTHALENCSDEE
LLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDG
APKPIVIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRY
EDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDQGNIISTSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVL
VDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKIEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMSAIAQDKEGFNSIYMMADSGARGSAA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNE
ILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELRIETVYEEVVMSVKNGEQEAKFVLRRSDIVKPSELAG
VSGKIEGKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAK
EKGAIKYYVLEANHLERTHGIKKGDIVSEKGLFAVVADDNGREAARHYIARGSEILIDDN
SEVSANSVISKPTTNTFKTIATWDPYNTPIIADFKGKVSFVDIIAGVTVAEKEDENTGIT
SLVVNDYIPSGYKPSLFLEGANGEEVRYFLEPKTSIAISDGFSVEQAEVLAKIPKATVKS
RDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRSMDYFV
DKGKQILVHADEFVHAGEAMTDGVVSSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGNGHV |
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| NT seq |
8625 nt +upstreamnt +downstreamnt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccgaca
gatttagaagttcctaatttattattattacaacgagacagctatgattctttcttgtat
tccaaagatggcaaagagagcgggattgaaaaggtttttaaatccattttccctatccaa
gatgagcataaccgcatcactttagaatacgcaggttgcgaatttggcaagtctaaatac
accgttagagaagcgatggagaggggcattacctactctatccccctcaaaattaaagtg
cgcttgatcttgtgggaaaaagataccaaaagtggcgaaaagaacggcattaaggacatt
aaagaacaaagcattttcattcgtgagatccctttgatgacagaacgcacttcatttatt
attaatggggtggagcgcgtggtggtcaatcaactccacagaagccccggtgtgattttc
aaagaagaagagtctagcacttctttaaacaagctcatttacacagggcaaatcatccct
gataggggttcgtggctgtattttgaatacgattctaaagatgttttatacgctcgtatc
aataaacgccgtaaagtgcctgttaccattttattcagggcgatggattatcaaaaacaa
gacatcatcaaaatgttctacccgcttgttaaagtgcgttatgaaaacgataaatatttg
atcccgtttgcttcattagacgccaatcaaagaatggaatttgacttgaaagatcctcaa
ggcaagatcattcttttagcgggcaaaaaactcacttcaagaaagattaaagagcttaaa
gaaaaccatttagaatgggtggaataccctatggatattttactcaatcgccatttagct
gagcctgttatggtggggaaagaagtcttattggacatgctcactcagctagataaaaac
aaattagaaaaaatccacgatttaggcgtgcaagaatttgtgatcatcaacgatctagcg
ttagggcatgacgcttccattatccaatctttttcagccgattctgagtctttgaaatta
ctcaagcaaaccgaaaaaattgatgatgaaaacgctctagcagcgattcgtatccataag
gttatgaaaccaggcgatcccgttacgactgaagtggctaagcagtttgtcaaaaaactt
ttctttgatccagaacgctatgatttgaccatggtaggccgtatgaaaatgaatcacaag
ttgggcttgcatgtgcctgattacattacgactttaacgcatgaagatattatcaccacc
gttaaatacctcatgaagatcaaaaacaatcagggcaagattgatgacagggatcacttg
ggcaatcgtaggatcagagccgttggggaattgttggccaatgaattgcattcaggctta
gtgaaaatgcaaaagaccattaaagacaagctcactaccatgagcggggcttttgattcg
ctcatgccccatgacttggtcaattctaaaatgatcacaagcaccatcatggaatttttc
atgggcggtcagctctcgcaatttatggatcaaactaaccccttgagtgaggttacgcac
aagcgccgcctttcagcactcggcgaaggggggttagtgaaagacagggtagggtttgaa
gccagggatgtgcaccccacgcattatggccgaatctgtcccattgagaccccagaaggt
caaaatatcggtctgatcaacaccctttccactttcacgagggtgaatgatttaggcttt
attgaagccccttataaaaaggttgtggatggcaaggtcgtgggtgagacgatttatctg
accgctattcaagaagacagccacatcatcgctcctgcaagcacccccattgatgaagag
ggtaatattttaggcgatttgattgaaacgcgcgtggaaggcgagattgttttaaacgaa
aaaagcaaagttaccttaatggatttaagctctagcatgctagtaggggtcgccgcatcg
ctcattcctttcttagagcatgatgacgccaaccgcgctttaatggggactaacatgcag
cgccaagccgtgccgttattaagaagcgacgctcccattgtaggcacagggattgaaaaa
attatcgctagggattcttggggagcgatcaaggctaatcgtgcaggcgttgtagaaaaa
attgatgctaaaaacatttatattttaggcgaaggcaaagaagaagcctatattgatgcg
tattctttgcaaaaaaacttgcgcaccaaccaaaacaccagtttcaatcaagtccctatc
gttaaagtgggcgataaagtggaggccgggcaaatcatcgctgatggccctagcatggat
agaggcgagttagcgttagggaaaaatgtgcgcgtggcgttcatgccttggaatggctat
aactttgaagacgccatcgtggtgagtgagcgcatcactaaagatgatattttcacttcc
acccacatttatgaaaaagaagtggacgctagggagcttaagcatggcgcggaagaattt
accgctgatattcctgatgtgaaagaagaagcgctcgctcatcttgatgaaagcgggatc
gttaaagtgggcacttacgtgagcgctggcatgattttagtgggcaagacttctcctaaa
ggcgagattaaaagcacgcctgaagagcggcttttaagggccatttttggggataaagcc
gggcatgtggtcaataagagtttgtattgcccccccagtttggaaggcacggtgattgat
gtgaaagtcttcactaaaaaaggctatgagaaggatgcacgggttttgagcgcgtatgaa
gaagaaaaagccaagcttgatatggagcattttgaccgcttgaccatgctcaatagagaa
gaattgttgcgcgttagttcgctcctttctcaagcgattttagaagagcctttcagccat
aacggcaaggattataaagaaggcgatcaaatccctaaagaagaaatcgcttcaatcaac
cgcttcactttggctagtttagtcaaaaagtattctaaagaagtgcaaaaccactatgaa
atcactaaaaataatttcttagagcaaaagaaagttttgggtgaagagcatgaagaaaag
ctctctattttagaaaaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacgaaagcttaaagtgggcgataaaatggcaggaaggcatgggaat
aaagggattgtgtctaatatcgtgccggttgcagatatgccttataccgctgatggcgag
cctgtagatattgtcttaaaccctttaggcgtgccaagccgcatgaatatcggacagatt
ttagaaatgcatttaggcttagtggggaaagagtttgggaaacaaatcgctagcatgcta
gaggataaaaccagagattttgccaaagaattgcgcgctaaaatgctagaaatcgctaac
gccattaatgaaaaagaccccttgacaacccatgcgcttgagaattgctctgatgaagag
cttttggaatacgctaaagattggagcaagggcgttaagatggctatccctgtgtttgaa
ggcatctcgcaagaaaaattttacaagctgtttgaattagccaagatcgctatggatggc
aaaatggatctgtatgatgggcgcacaggcgagaaaatgagggagcgcgtgaatgtgggc
tacatgtatatgatcaaactccaccatttagtggatgaaaaagtccatgccagaagcaca
ggtccttatagcttggtaacgcaccagcctgttgggggtaaagcgctctttgggggtcaa
aggtttggggaaatggaagtgtgggccttggaagcttatggcgcagcacacactctaaaa
gaaatgcttaccattaaatccgatgatattagaggcagagagaacgcttatagggctatc
gctaaaggtgagcaagtgggcgagagcgaaatccctgagactttctatgttttgactaaa
gaattgcaatcgctcgctttggatattaatatttttggggacgatgtggatgaggatgga
gcgcctaaacccattgtcattaaagaagatgacaggcctaaagactttagctctttccag
ctcactctagccagccctgaaaaaatccattcttggagttatggggaagttaaaaagcca
gaaacgatcaattatcgcaccttaaaacctgaacgagacggcttgttttgcatgaaaatc
tttggccctactaaagattatgaatgcttgtgcggtaaatacaaaaagcctcgcttcaaa
gacattggcacatgcgaaaaatgcggcgtggcgatcacgcactccaaagtcaggcgtttt
agaatggggcatattgaattggccactcctgtagcgcacatctggtatgtcaattcctta
cctagccgtatcggcacgcttttaggcgttaagatgaaagatttagagcgcgtgttgtat
tatgaagcttatatcgttaaagagccaggcgaagccgcttatgacaatgaaggcactaag
cttgtgatgaaatacgatattttgaatgaagagcagtatcaaaatatctcacgaagatac
gaagacaggggatttgtggcgcaaatgggcggcgaagcgatcaaggatttgttagaagaa
attgatttgatcaccttattgcagagtttgaaagaagaagtgaaagacaccaattctgat
gcgaaaaagaaaaaactcattaagcgtttgaaagtggtagaaagctttttaaattctggt
aacaggcctgagtggatgatgctcacggttttaccggtattgccaccggatttaaggcct
ttagtcgcgctagatggcgggaagtttgcggtcagcgatgtgaatgaattgtatcgtcgt
gttatcaatcgtaaccaacgcttgaaacgcctaatggagcttggggcgccagaaatcatt
gtgcgcaacgaaaaaaggatgttgcaagaagccgtggatgtgctttttgataacggccgc
agcactaatgcggttaaaggggctaacaagcgccctttaaaatcgctcagtgagatcatt
aaaggcaagcaagggcgtttcaggcaaaaccttttaggtaagcgcgtggatttttcaggc
agaagcgtgattgtggtggggcctaatctcaaaatggatgaatgcgggttgcctaaaaac
atggcgttagaactcttcaaaccgcatttgttatccaagcttgaagagaggggctatgcc
accacgctcaaacaagctaaacgcatgattgagcaaaaaagcaatgaagtgtgggagtgc
ttgcaagaaatcacagaggggtatccggtgttactcaaccgcgctcctaccttgcacaag
caatccattcaagcgttccatccaaagctgattgatggcaaagcgatccaattgcacccg
ttagtgtgttcagcgttcaatgccgattttgacggggaccaaatggcagtgcatgtgcct
ttaagccaggaagcgatcgctgaatgcaaggtgcttatgctaagctctatgaatatcctt
ttacccgctagcggtaaagccgtagccattcctagccaagatatggttttagggctttat
tatctttctttagaaaagagtggggtcaagggcgaacataagcttttttctagcgtgaat
gaaatcatcaccgctattgacacgaaagaattagacatccacgcaaagattagggtttta
gatcaagggaatattatctctacgagcgcagggcgcatgatcattaaatctattttgcct
gattttatccctacggatttgtggaacagacccatgaagaaaaaagatattggcgtgctt
gtggattatgtgcataaagtcggcggtatcggtattactgcaacctttttggataattta
aaaacgcttggctttaggtatgcgactaaggctggtatttctatctctatggaagatatt
atcacgccaaaagacaagcaaaaaatggtggaaaaagccaaaatagaggttaaaaaaatc
cagcaacaatacgatcaagggttgctcactgaccaagagcgttacaataagatcattgac
acttggactgaagtcaatgacaaaatgagtaaagaaatgatgagcgctatcgcgcaagat
aaagagggctttaactctatttatatgatggcagatagcggcgcaagggggagcgcggcg
caaatccgtcagctttcagcgatgaggggccttatgacaaagccggacggcagtatcatt
gaaacgcccattatctctaactttaaagaggggttgaatgtcttagaatactttaactcc
acgcatggcgctagaaagggcttggcggatacagcgctaaaaacagccaatgcggggtat
ttgacaagaaagctcattgacgtttcgcaaaatgtcaaggtggtgtctgatgattgcggc
acgcatgaagggattgaaatcacggatattgcggtggggagtgagctgattgaaccttta
gaagagcgtatttttgggcgcgttttattagaagatgtgatcgatcccattacgaatgaa
atcttgctttatgcggacactttgattgatgaagagggcgctaaaaaggtggttgaagcc
gggattaaatccattacgatccgcaccccagtaacttgtaaagcgccaaagggcgtgtgc
gcgaaatgctatggcttgaatttgggcgaaggcaagatgagttatccgggtgaagcggtg
ggcgtggtagccgcgcaatctatcggggagcctggaacgcagctcactttaaggactttc
catgtgggcgggacagcgagcaggagtcaggatgagcgtgaaatcgtggcgagcaaagaa
ggttttgtgcgtttttataaccttaggacttacacgaataaagagggtaaaaacattatc
gctaaccgccgtaacgcttctattttagtggtagagcctaagattaaagcgccttttgat
ggggaattacgcattgaaacggtctatgaagaagtcgttatgagcgtgaaaaatggcgag
caagaagctaagttcgttttaagaagaagcgatattgtcaagccaagcgaattagccggc
gttagcggtaagattgaggggaaagtgtatttgccttatgctagcgggcataaggtgcat
aagggaggaagtatcgctgatattatccaagagggctggaatgtgcctaatcgcatccct
tatgcgagcgaattgctagtcaaggataatgaccctattgcgcaagatgtgtatgccaaa
gaaaaaggtgcaatcaaatattatgttttagaggctaaccatttggagcgcacccatggg
atcaagaaaggcgatattgtgagcgaaaaaggcttgtttgcggtggtagctgatgataat
ggtagggaagccgctcgccattatatcgctaggggttctgagatcttgattgatgataat
agtgaagtgagcgctaatagcgtgatctctaaacccacgactaacacttttaaaacgatt
gccacatgggatccttacaacacccctatcattgcggactttaagggtaaggtgagtttt
gtggatattatcgcaggggttacggtcgctgaaaaagaagacgaaaataccggtatcacc
agtttagtggtgaatgattacattccaagcggatacaaaccaagcttgtttttagagggg
gctaatggcgaagaggtgcgttatttcctagagccaaaaacttctatcgccattagcgat
ggctttagcgtggagcaggctgaagtgttagcgaaaatccctaaagcgaccgttaaatcc
agggatattactgggggtctcccaagggtttctgaactctttgaagcgagaaaacccaag
cctaaagatgtggcgatcctttctgaagtggatgggatagtgagttttggcaaacctatt
cgcaataaagaacacatcatcgtaacttctaaagatggccgttccatggattattttgtg
gataaaggcaagcaaattctagtgcatgccgatgaatttgtgcatgcgggagaagcgatg
acggacggagtggtttcaagccatgatattttaaggatcagtggcgaaaaagagctttat
aaatacattgtgagcgaagtccagcaagtgtatcgcaggcagggggtgagcattgccgac
aagcacattgaaatcattgtctctcaaatgctaaggcaagtgcgcattttagacagcggg
gatagcaagtttattgaaggggatttagtcagtaaaaaactcttcaaagaagaaaacgct
cgtgtgatcgctttaaaaggcgagccagcgattgctgaaccggtgcttttagggatcacc
agagcggctatcgggagcgatagcatcatttcagcggcctctttccaagaaacgactaaa
gttttaacagaagccagtatcgctatgaaaaaagactttttagaggatttgaaagagaat
gtggtgttggggaggatgatccctgtgggaaacgggcatgtataa |
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