Helicovermis profundi: HLPR_08380
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Entry
HLPR_08380 CDS
T09891
Symbol
rlmD_2
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
hprf
Helicovermis profundi
Brite
KEGG Orthology (KO) [BR:
hprf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hprf03009
]
HLPR_08380 (rlmD_2)
Enzymes [BR:
hprf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HLPR_08380 (rlmD_2)
Ribosome biogenesis [BR:
hprf03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HLPR_08380 (rlmD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Cons_hypoth95
Methyltransf_15
MTS
TRM5-TYW2_MTfase
PrmA
Methyltransf_4
PCMT
Motif
Other DBs
NCBI-ProteinID:
BEP28507
UniProt:
A0AAU9E789
LinkDB
All DBs
Position
971171..972541
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AA seq
456 aa
AA seq
DB search
MNKNLEVGHEIEITINDLIDSGEGIGKLNEFAVFVEGAVPGDTIKCKITSVKKTYAYGEL
IEIINSSEIRDTPKCQYFNECGGCQMQNVKYQEQLKLKEKSVKDALKRIGEFKDIKIKAI
VGMKENFRYRNKASYAISEVNGEVRIGFKKRNSHDVIDIEDCLLQDKEYVNIFKAIKKYI
ADFKVTIYNVETHKGLLRHVVIKKSFSENTLMVILVTNRSKLVMTKALAKGIVESDNRVV
SVIQNINKVVGSKILGNDNKILFGDDHIVDKISGMKFKISPLSFFQVNSSQAEVLYEKAI
EYADLKGEETVFDLYSGIGSIGMLMAKKAKKVYGVESVKSAVIDAWGNAKLNDIANIEFI
TGRAEKVIPKLFNKGEGVKADVVVVDPPRKGCDKELLDTMIMMEPERIVYVSCKASTLAR
DLRILCDNGYKLVDVTPVDMFPHTMNVESVSKLVRK
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgaataagaatttagaagtaggccatgaaattgaaataacgattaatgatttaattgat
tcaggagaaggtattggaaaattaaatgaatttgctgtgtttgtagaaggtgctgttcct
ggtgatacaataaaatgcaaaattacaagtgtaaaaaaaacatatgcgtatggtgaatta
attgaaattataaattcgtctgaaataagagatacaccaaaatgtcagtattttaatgaa
tgtggtggatgtcaaatgcaaaatgttaaataccaagaacaattaaaattaaaagaaaaa
tctgttaaagatgctcttaaaagaataggtgaatttaaagatattaaaattaaggcaatt
gttggtatgaaggagaactttagatatagaaataaagcttcatatgcaattagcgaggtt
aatggagaggttagaataggatttaagaaaagaaattcacatgatgtaattgatattgaa
gattgtctacttcaagataaggaatatgtaaatattttcaaagcaataaagaaatacatt
gcagattttaaagtgacaatttataacgtcgaaacacataaaggtttacttagacatgtg
gttataaaaaaatcattttctgaaaatacgttaatggtaattttagttacaaatagaagt
aagcttgttatgacaaaagctttagctaaaggcattgtagaatctgataatagagttgtt
tcagttattcaaaatataaataaagttgttggaagtaaaatacttggaaatgataataaa
atattgtttggtgatgatcatattgtagacaaaattagtggaatgaagtttaaaatatct
ccattatcattcttccaagtgaattcatctcaagcagaagttttgtacgagaaagctata
gaatacgctgatttaaaaggtgaagaaactgtatttgacctatattcgggcattggttca
ataggtatgcttatggcaaaaaaagctaaaaaagtatatggagttgaatcggttaaaagt
gcagtaattgatgcttggggaaatgcaaaattaaatgatatagcaaatattgaatttatt
acaggaagagcagaaaaagtaatacctaaactttttaataaaggtgaaggtgtaaaagcg
gatgttgttgtagtagatccaccgagaaaagggtgcgataaagaacttcttgatacaatg
ataatgatggagccagaaaggatagtatacgtttcttgtaaagcatcaacacttgctaga
gatttaagaatactttgtgataatggatataaattagttgatgttactccagttgatatg
tttcctcataccatgaacgtggagagtgtttcaaaacttgttaggaaatag
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