Helicovermis profundi: HLPR_08390
Help
Entry
HLPR_08390 CDS
T09891
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hprf
Helicovermis profundi
Pathway
hprf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hprf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HLPR_08390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hprf03019
]
HLPR_08390
03009 Ribosome biogenesis [BR:
hprf03009
]
HLPR_08390
Enzymes [BR:
hprf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HLPR_08390
Messenger RNA biogenesis [BR:
hprf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HLPR_08390
Ribosome biogenesis [BR:
hprf03009
]
Prokaryotic type
rRNA helicases
HLPR_08390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
UvrD-helicase
AAA_19
Nfu_N
ERCC4
Motif
Other DBs
NCBI-ProteinID:
BEP28508
UniProt:
A0AAU9E2F8
LinkDB
All DBs
Position
972684..974117
Genome browser
AA seq
477 aa
AA seq
DB search
MNKFEKYNLDKSLTKALLLMDYIEPTEVQAQSIPVIKDHKDLLIKSETGSGKTAAFAIPI
IDEVMWEENAPQVLVLTPTRELAQQVSEEMFNIGRFKRMKVVSVFGKSPIKSQIKDLKQK
THIVVGTPGRIFDHIKRGTLDLSKIKYLVLDEADEMLNMGFVDQIEEILSKIPKGFIMTL
LSATLPDDLSKICNRYMNSPVIVEIEKTTTQKRIEQIRYDVPKKTKMDVLLDITVIENPD
TCIIFCNTRLQVDEIFTSMKKAGYPCEKLHGGMEQDIRTKVMQNFRKRYFRYLIATDVAA
RGIDIDDISLIINYDLPEEPQVYVHRIGRTGRKEKQGKAISLVAGDSYLLKGITELTNNE
LTKRFVPDKNLVESMRESFIEKINKKQEIRHEKHKELHQEIMKIHINVGKKTKMRAGDIV
GALCNIEGMTKDDIGNISIIDVSTFVEILNNKGEMVLRKLQDTPIKGRLRKVNRANE
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatttgaaaaatataatttagataagtcattaacaaaagcacttctgcttatg
gattatatagaaccaactgaagtgcaagcacaatcaattccagtgatcaaagaccataaa
gatttacttataaaatcagaaactggtagtggtaaaacagctgcttttgcaattcctatt
attgatgaagttatgtgggaagagaatgcaccacaggtattagtattaacgcctacaaga
gaattagcccagcaggtttcagaggaaatgtttaatattggtaggttcaagagaatgaaa
gtagtatctgtctttggtaagtcaccaattaaatcacagatcaaagatcttaagcaaaaa
actcatattgtagtaggcactccagggagaatatttgatcatataaaacgtggaacgtta
gatttatctaaaattaaatatttagtattagatgaagcagatgaaatgctaaatatgggt
tttgttgatcagatagaagaaatattaagtaaaatacctaaaggttttataatgactcta
ctatcagcaactttgccagatgacctttctaagatatgtaatcgttatatgaatagtcct
gtgattgttgaaattgaaaaaacaacaactcaaaagcgtatagagcaaattaggtatgat
gttcctaaaaaaactaagatggatgtattattagatattactgttattgaaaatccagat
acttgtattattttttgcaatactaggcttcaagtagatgaaatttttactagcatgaaa
aaagcaggttatccttgcgaaaaattacacggtggtatggaacaggatattcgtacaaaa
gtaatgcaaaattttagaaaaagatactttagatatcttattgctacggatgtagcggca
cgtggaattgatattgatgatatttcattaataataaattacgatttacctgaagaacca
caagtatatgtacatcgaattggaagaactggaagaaaagaaaaacaaggaaaagcaata
tcattagtggcaggcgattcatatttattaaaaggaattactgagttaactaacaatgaa
ttaactaagcgatttgttcctgataaaaatttagttgaatctatgcgagagtcttttatt
gagaaaattaacaaaaaacaagaaattagacatgaaaaacataaagaattacatcaagaa
ataatgaaaattcatattaatgtaggtaaaaaaacaaaaatgagagcaggggatattgtt
ggtgctctttgtaatattgaaggcatgacaaaagatgacattggaaatattagtataatt
gatgtttctacttttgtagaaatattaaataataaaggtgaaatggttttaagaaaactt
caagatacaccaataaaagggcgattaagaaaagtaaatagggcaaatgaataa
DBGET
integrated database retrieval system
