Helicovermis profundi: HLPR_17180
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Entry
HLPR_17180 CDS
T09891
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hprf
Helicovermis profundi
Brite
KEGG Orthology (KO) [BR:
hprf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hprf03032
]
HLPR_17180 (topA)
03400 DNA repair and recombination proteins [BR:
hprf03400
]
HLPR_17180 (topA)
Enzymes [BR:
hprf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HLPR_17180 (topA)
DNA replication proteins [BR:
hprf03032
]
Prokaryotic type
DNA Topoisomerases
HLPR_17180 (topA)
DNA repair and recombination proteins [BR:
hprf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HLPR_17180 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_InsA
Zn_ribbon_RPB9
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
BEP29387
UniProt:
A0AAU9EF65
LinkDB
All DBs
Position
complement(1945930..1948014)
Genome browser
AA seq
694 aa
AA seq
DB search
MGKYLVIVESPAKAKTIEKFLGKNYTVKASVGHVRDLPKSKMGIDIENDFEPNYITIRGK
GPVVKELRKAAKKAEKIFLATDPDREGEAIAWHLSFMLGIDIKEKCRVEFHEITKDAIRA
AIKKPKEINMKLVDAQQARRILDRLVGYSISPILWNKVKKGLSAGRVQSVATKLIVDREE
SIKAFNSEEYWSVHASLLNKLSELSVYDLALKNNKKIEIKSIEEAENIKKDISENDFIVE
SVEKKVKKRSPYACFTTSSLQQEAANRYGFSTKKTMIIAQQLYEGINIKKNGTIGLITYM
RTDSTRISNEAKEELSSFIVENLSEDYLKKSVKKTTKKKTTQDAHEAIRPTSVLRIPLEI
EGSLSKDQYKLYKLIWERFVASQMADALYDSISVKVKNGEYLFKSSGSKLKFDGFLKIYS
YSATKDKEIAEVQVNEKLKSKNIDLDQHFTQPPARYTEASLVKYMEENGIGRPSTYAPTI
GTIIGRGYIEREKKSLKPTELAYIINEIIVNYFTSIVSVDFTASLENNLDNVENDELEWK
SIIRDFYSPFKEMLEHADKELDKIDLTEETDIVCEKCGAFMNIKHGRYGKFLACSNYPEC
SNTKAILKEIGVHCPKCESGQVVERKTRKYKTFYGCSTFPDCNFVSWNRPIGRLCPICSD
VLVERKTKKIHRIECANKECKYIEEINNDEKQEA
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagtacttagttatagttgaatctcctgcaaaagcaaaaactattgagaagttt
ttaggtaagaattataccgtcaaagcttcagtgggacatgtaagagatttgcctaagagt
aaaatgggtatcgatatcgaaaatgattttgaacctaattatattactattagaggaaaa
ggaccagttgtaaaggaacttagaaaagctgcgaaaaaagcagaaaaaatatttcttgca
actgaccccgatagagaaggtgaagcgattgcgtggcatctttcttttatgttaggtatt
gatataaaagaaaaatgtagagtggagtttcacgaaataacaaaagatgctattagagca
gctataaaaaaaccaaaagaaataaatatgaagttggttgatgctcagcaagcaagaaga
attttagatagattagttggatatagtattagtccaatactttggaataaagttaaaaaa
ggacttagtgctggtagagttcagtcagttgctactaaattgattgttgatagagaagag
tcaatcaaggcatttaatagtgaagaatactggagtgttcatgcgagtttattaaacaaa
cttagtgaattgtctgtttacgatttagcactaaaaaataataaaaaaatagaaattaaa
tcaatagaagaagctgaaaatataaaaaaagatattagcgaaaatgattttattgtagaa
agcgttgagaaaaaagttaaaaagagatctccctatgcatgctttactacttctagtctt
cagcaagaagcggcgaataggtatggattctcaactaagaagacgatgattatagctcag
cagttatatgaaggaattaatatcaaaaaaaatggtacaattggtttaattacttatatg
aggactgattctacgagaatatctaatgaagcaaaagaagaacttagctcatttatagtc
gaaaatttaagtgaagattacttgaaaaaatctgttaaaaaaactacgaagaaaaaaact
actcaagatgctcatgaggctataaggccaacaagcgtactacgtatccctcttgaaata
gagggttctctaagtaaagatcaatataaactttataaattgatatgggaaagatttgtt
gcaagtcaaatggctgatgcattatatgattcgataagtgttaaagttaaaaacggcgaa
tatttatttaaatcttcaggttcaaaattaaaatttgacggatttctaaaaatttattct
tatagtgctacaaaagataaagaaattgctgaagttcaagttaatgaaaaattaaaatct
aaaaatatagacttagaccagcattttactcagccacctgcaagatatactgaggcgagt
ttggtgaaatacatggaagaaaacggaattggtagaccaagtacttacgcacctacgatt
ggtacaattattggtagaggttatatagaacgagaaaaaaaatcattaaaacctacagag
cttgcatacatcatcaatgaaataattgtaaattattttacaagtattgtttcggttgat
tttacagcaagtcttgaaaacaatctagataatgttgaaaatgatgaattagagtggaaa
agcattataagagatttctatagtccttttaaagaaatgctagagcatgctgataaagaa
cttgataaaatagatttaactgaagaaacagatattgtttgtgaaaaatgtggtgcattt
atgaatatcaaacatggaagatatggtaaattcttagcatgttcgaattatcctgagtgc
tcaaatacaaaagctattttaaaagaaattggagtacattgtcctaaatgtgagtcgggt
caagttgttgaaagaaaaacaagaaagtataaaactttttatggatgtagtacttttcct
gattgtaattttgtttcatggaatagacctattggacgcttatgtccaatttgttcagat
gtattggttgagagaaaaacgaaaaaaatacatcgaattgaatgtgcaaataaagaatgt
aaatatatagaagaaattaataatgatgaaaaacaggaggcttaa
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