Helicovermis profundi: HLPR_22000
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Entry
HLPR_22000 CDS
T09891
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hprf
Helicovermis profundi
Pathway
hprf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hprf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HLPR_22000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hprf03019
]
HLPR_22000
03009 Ribosome biogenesis [BR:
hprf03009
]
HLPR_22000
Enzymes [BR:
hprf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HLPR_22000
Messenger RNA biogenesis [BR:
hprf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HLPR_22000
Ribosome biogenesis [BR:
hprf03009
]
Prokaryotic type
rRNA helicases
HLPR_22000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DbpA
Cas3-like_C_2
AAA_19
SNF2-rel_dom
Flavi_DEAD
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
BEP29869
UniProt:
A0AAU9EEL7
LinkDB
All DBs
Position
complement(2476938..2478365)
Genome browser
AA seq
475 aa
AA seq
DB search
MKFKNLNISSEIKHALSDLGFTDTLKVQESAFESIIDEKDLIVMSQTGSGKTAAFAIPII
EKIDMSVSKAQAIILVPTRELALQVKEDFDDISKYKNVKSIALYGKEDMQVQRKKLKIVN
HVIVSTPGRLMDHLIKGNVNEIKYLVIDEADEMLIMGFIEQIRNVIKRLPKERTTLLFSA
TISEKTEELASEYMSNPKKILIESNISPIDKIEQIYYKVPGIKKVDFLKKMLKREEPRKC
IVFCNTRDEVINLYRILNKFNSKVCALHGGMKQEDRFIAYRDFKKNKYNILIATDVSSRG
IHIQGVTHVVNYYVPFETEQYVHRIGRTGRVDKSGVAITFVSDREMERFEEIEEFIGYKI
PLKGGYIEKKTKRTDDEEVKGKRKKFKDNFKNKKRVQLELNVGRANSKIKVKDITFAVGR
IKGVDPTDLGQINISAMNTRFFVLNGKEELVLKALKNKEVNGNKFRIKKVNKKRR
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaaaaatttgaatatctcaagtgagataaaacatgcactaagtgatcttggt
tttaccgatactcttaaggtgcaagaaagtgcatttgaaagtatcatagatgaaaaagat
ttaatcgtaatgtcacaaacaggaagcggtaaaacagcagcgtttgctattcctattata
gagaaaattgatatgtctgtaagtaaagcgcaggcaattattttggtacctacaagggaa
cttgcgcttcaagttaaagaagattttgatgacattagtaaatataaaaatgttaaatcg
attgcactttatggaaaagaagatatgcaagtacaaagaaaaaaacttaagattgttaat
catgttatagtttcaacgccaggcagacttatggatcatttgattaagggaaatgtaaat
gaaattaagtatttggttattgacgaagctgatgaaatgttgattatgggatttattgag
caaattagaaacgttataaagagacttccaaaagaaagaactacattacttttttctgct
acaatttctgaaaaaactgaagagcttgctagtgaatacatgagtaacccaaagaaaatt
ttaattgaatcaaatattagtcctattgataaaatagaacaaatttattataaagttccc
ggtattaaaaaagttgattttttaaagaaaatgcttaaaagagaggaacctagaaaatgt
atagtattttgtaatacaagggatgaggttattaacttatatagaatactaaataagttt
aattctaaagtgtgtgccttgcatggtggaatgaagcaagaagatagatttattgcatat
agagattttaaaaagaataaatataatatattaattgctacagatgttagctcaagaggt
atccatattcaaggagttacgcatgttgttaattattatgttccctttgaaacagaacag
tatgttcatagaataggtagaacgggtagggttgataaatctggtgtagctataaccttt
gtttcagatagagaaatggaaagatttgaagaaatagaagaatttatcggttacaaaata
ccactaaaaggtggatatattgaaaagaaaaccaaaagaaccgatgatgaagaagttaag
ggtaaaaggaagaaatttaaagataattttaagaataaaaaaagagtacaattagaactt
aatgtaggaagagcaaattctaaaatcaaagtaaaagatattacgtttgcagtaggaagg
attaaaggagttgatccaactgatctcggtcaaattaatatttctgctatgaatacaaga
tttttcgtattaaatggaaaagaagaacttgttcttaaagcattaaaaaacaaagaggtt
aatggcaataaatttagaattaaaaaagtaaataaaaagagaagataa
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