Helicovermis profundi: HLPR_24300
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Entry
HLPR_24300 CDS
T09891
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
hprf
Helicovermis profundi
Pathway
hprf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hprf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HLPR_24300 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hprf03021
]
HLPR_24300 (rpoA)
03400 DNA repair and recombination proteins [BR:
hprf03400
]
HLPR_24300 (rpoA)
Enzymes [BR:
hprf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HLPR_24300 (rpoA)
Transcription machinery [BR:
hprf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HLPR_24300 (rpoA)
DNA repair and recombination proteins [BR:
hprf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HLPR_24300 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
SpoIVA_ATPase
RAD51D_N
DUF2325
Motif
Other DBs
NCBI-ProteinID:
BEP30099
UniProt:
A0AAU9E5Z7
LinkDB
All DBs
Position
complement(2729632..2730582)
Genome browser
AA seq
316 aa
AA seq
DB search
MIEIEKPNIECVELNENNTYGKFVVEPLERGYGHTLGNSLRRILLNSLPGTAVKWIKVEN
VLHEFSTVPGVKEDIIDIIINLKNLCAKIYSDDETKILRIEATEAGEVTAGDIIADSDVE
ILDTDLHIATLDENASLIMEIALSKGRGYVSSDMNKEEGLPIGIIPIDSIFTPVKKVNYA
VSNTRVGQSSDFDKLELEIWTDGSIKPDEAASIGAKIMSEHLNLFIDMTDNADSIEIMVE
KEEDKKEKVLEMTIEELDLSVRSYNCLKRAGINTVEELAKKDEDEMMKVRNLGKKSLEEV
KKKLEDLSLGLRAEEE
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
gtgatagaaatagaaaagcctaatatagaatgtgttgaattaaatgaaaataacacatat
ggaaaatttgttgttgaaccattagaaagaggttatggacatacacttggaaatagctta
agaagaatactattaaattctcttccaggaactgctgtaaagtggattaaagttgaaaac
gtgttacacgaattttcaactgtacctggtgtaaaagaagatataatagatattattatt
aatctaaagaatttgtgtgcaaaaatctattctgatgatgagacaaaaattttacgaatt
gaagctactgaagcaggagaagttactgctggtgatattattgctgattcggatgtagaa
atacttgatacagaccttcatattgcaacattagatgaaaatgcttctctaattatggag
attgcactttctaaaggtagaggttatgtatcttcagatatgaataaagaagaaggactt
ccaattggaataattcctattgattctatttttactcctgttaagaaagttaactatgca
gttagcaatactagagttggacagtcttcagattttgataaattggaacttgaaatatgg
actgatggatcaataaaacctgatgaagctgcatcaataggtgcaaaaatcatgtcggaa
catttaaatcttttcattgatatgacagataatgctgatagtattgaaatcatggttgaa
aaggaagaagataaaaaagaaaaagtacttgagatgacaattgaagaacttgatctttca
gttcgttcatataattgcttaaaacgtgcaggtatcaacacagttgaagaacttgctaaa
aaagatgaagatgaaatgatgaaagtaagaaatcttggaaaaaaatctcttgaggaagtt
aagaaaaaactcgaagatctaagcctcggcttaagagctgaagaagaataa
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