Helicovermis profundi: HLPR_25900
Help
Entry
HLPR_25900 CDS
T09891
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hprf
Helicovermis profundi
Pathway
hprf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hprf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HLPR_25900 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hprf03021
]
HLPR_25900 (rho)
03019 Messenger RNA biogenesis [BR:
hprf03019
]
HLPR_25900 (rho)
Transcription machinery [BR:
hprf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HLPR_25900 (rho)
Messenger RNA biogenesis [BR:
hprf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HLPR_25900 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
S1CSD-TOTE-2
NACHT
ResIII
Spore_III_AA
OB_RNB
AAA_22
AAA_25
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BEP30259
UniProt:
A0AAU9EFI2
LinkDB
All DBs
Position
complement(2890661..2892076)
Genome browser
AA seq
471 aa
AA seq
DB search
MNVEMLQDKTIIDLKEIAKAMKLKGISKLRKDELVDLIINGNSEEKEIESLEKEKEKDDK
IEVEVAKELPKEKLIKKTEAVEKKIEKDASKVYIGDKVFEKGSEEVEGVLEVIDQGYGFL
RFKNFLTSELDVYISPSQIKKFSLRTGDKIKGVTRIPRSNERFRALLYVLNVNGLKPISN
YRRPKFDNLTPLYPTERFELGKNSKEFSLRLIDFLAPIGKGQRGLIVAPPKAGKTMLLQK
IAKSITENNKETEVIVLLIDERPEEVTEMERSINADVISSTFDELPSHHIKVAEMVLSRA
KGLVEQKKDVVILLDSITRLARAYNLVIPSSGRTLSGGLDPAALHLPKRFFGAARNIEEG
GSLTILATALIETGSRMDEVIFEEFKGTGNMEITLSRKLSEKRIFPAIDINKSSTRREEL
LLTQSELEAVWTIRRAIDNRNAYEITDYIISRILKSKTNEEFISLIKNGLK
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgtagaaatgcttcaagataaaacaattattgatttgaaagaaattgctaaagca
atgaagttaaagggaatttcaaaattaagaaaagatgagctggttgatttgattattaat
ggaaattctgaagaaaaggaaatagaaagccttgaaaaagaaaaagaaaaagatgacaaa
atagaagttgaagttgctaaagaattaccaaaagaaaagctaataaaaaaaacagaagca
gtagagaagaaaatagaaaaagacgctagtaaagtatatattggtgataaagtatttgaa
aaaggatctgaggaagttgaaggagttcttgaagttattgatcaaggctatggattttta
agatttaaaaattttttaactagcgaacttgatgtatatatatctccatctcaaataaag
aaattctcacttagaacgggcgataaaattaagggagtcacaagaattcctagatcaaat
gaaagatttagagctcttctatatgtgctaaatgtgaatggactaaaaccgatatcaaat
tacagaaggcctaaatttgataaccttacacctctttatcccactgaaagatttgaactt
ggaaaaaattcaaaggagttttctcttagattgatagattttttagctccgataggaaaa
ggtcaaagaggtttgattgttgcacctccaaaagcaggtaagacaatgctacttcaaaaa
atagctaaatctattacagaaaataataaagaaactgaagtgattgttttattaatagat
gaaagacctgaagaagtcactgaaatggaaagatcgattaatgctgatgttatttcatca
acatttgatgaacttccgtctcatcatattaaagtagcagaaatggttttaagtagagcg
aaaggattggtagagcaaaaaaaagatgtagtaatattattagatagtattacaagactc
gctagagcgtataatttagttattccatcaagtggaagaacgctttcaggagggctagat
cctgctgcgcttcatttaccaaaaagattttttggagctgcaagaaatattgaagaaggt
ggtagtcttacaatacttgctactgcattaattgaaactggttcaagaatggatgaagta
atatttgaagagtttaaaggtacaggaaatatggagattacattaagtagaaagctttca
gaaaagagaattttccctgcaattgatattaataagtcaagtacaagaagagaagaactt
ttacttacgcaaagtgagcttgaagcagtctggactattagacgtgctatagataataga
aatgcatatgaaattacagattatattattagtaggattttgaagtcaaaaactaatgaa
gaatttattagtttaatcaaaaatggtttgaaatag
DBGET
integrated database retrieval system
