Candidatus Haliotispira prima: P0082_00785
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Entry
P0082_00785 CDS
T09917
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpri
Candidatus Haliotispira prima
Pathway
hpri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P0082_00785 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpri03400
]
P0082_00785 (mfd)
Enzymes [BR:
hpri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P0082_00785 (mfd)
DNA repair and recombination proteins [BR:
hpri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P0082_00785 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
SNF2-rel_dom
UB2H
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WGK69426
LinkDB
All DBs
Position
202239..206174
Genome browser
AA seq
1311 aa
AA seq
DB search
MNLDISDKLQAPQQLYQLLCDKVFSENSPHSSDRAAGPLFDLTALERDKGQRWQESVRFS
PALAVAQVLEQHDSLLVVLPDSEDMYRLQEDLKALGLEALDFPNWGSSLYKGIRSQNRLF
TKRSSVLARICLWREGHRDGGPLLVLCNLRSLAAVLPPPAELGSNIVHLETGCPMQPAQL
ARLLSSYGYYQVPRVSLPGEFALRGEVLDLYPPSGQDNRAVRVMFGFDEVELLKIFDVSS
QISDQNIDGFSLFPLKEVLWKEAEQKCLRRHLEDLLLEARPSDFGFDPSEQSNPEWEAFW
QNQQNQIEELLSRLARQGETSQGEVKAEELLFPFGRDKPASLQDYMGEDCPILFWGMQRI
EQQEEAYLHELEVLYRQSLIPFEERRGGQDTRESGEARGQVRGPEALFPELVQRKLLHPK
CFAVDLSLVHGRCRAPIVVDEFEGRPWPLELEPTLQYHGNFNRFSEDLKAWLEQDYHVAI
GCSSTAQAQRLLHLLRDYAEDLHFYPVELSQGVIFPRQKLALLQEWEILGTEGRGSGSGR
HGGSLAYGGGRPGKDREKTERIAKRLSQSEVISSFVDLKEGDLVVHVQHGVGRFKGIERI
STSRMERDYLAIEYSDSNTLFVPIEQVNMVQHYIGSESAGLRLDRIGGKAWQERKAKTRK
AVEDLADRLLRLYTRRAAAPGPGCPPDDDLMEEFEADFPYEPTGDQLRAIGEIKGDMEDP
KPMDRLLCGDVGFGKTEVAMRAGFKMACTGRQVLVLCPTTILAEQHYRNFSKRFARFPLR
IAMLSRFVESKQQKVVLGSLERGEVDILIGTHRLLSKDIHLRNLGLIVIDEEQRFGVKHK
ERLKMLKTSVDCLAMSATPIPRTLHMSLVQIRDISMLATPPGGRHPVETFVREFNPESIA
EAIRRELSRGGQVFYLHNRIESLDEILLFLRDLVPESLIETAHGRMGSKELEDIMYRFVH
GGFNVLLATAIIENGIDIPNVNTIIIDRADRYGIGQLYQLRGRVGRADRLAYAYLFYPDR
SGLSDLALKRLKIISDFTELGSGFKVAMKDLEVRGAGNLLGPEQSGNILAVGFEMYTGML
AKAMHERKYRLEQEEGGQISEAEPMEYDEEISLELDYSGFIPDSYIADATEKIELYKRIS
SISSTERLSEFYEEIYDRFGNPPEEVHSLLSLSEVRIVCRRVGINLLKERQDQVEVQFSK
ARPLPLEKIMEQIRLYPKVFRIDPKRSDTLLINLQSFMELEAQDLWAAKQERKTKNRQKK
KSGNRNADYLSQESVSETGKETGPIGDNPLLRKTAALRRVLSSFQNGVSAE
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcgatatttccgataagctacaggctcctcagcaactgtatcaattgttgtgt
gacaaagtcttttccgaaaattctccccattcttccgatcgggccgcaggccctctgttc
gatttgaccgcattggaaagggacaagggacaacgctggcaagagagcgtgcgattcagt
ccggccttggccgtggctcaagtattggaacagcacgattcactgttagtcgtgctgccc
gacagtgaagacatgtaccggcttcaggaggacttaaaggccttaggtttggaggctctg
gattttccgaactggggcagcagcctgtacaaaggcatacgttcgcaaaaccggctgttc
actaaacgcagttctgtgctggcccggatatgcctctggcgggaagggcacagggacggg
ggccccttgctggtgctgtgcaacctgcgctctctggccgcagttttgcccccgcccgca
gagttgggcagcaacatcgtgcatttggaaaccggctgccctatgcagccggctcaactg
gcccggttgctcagcagctatggctattatcaggtgccccgcgtcagcctgccgggtgag
tttgccttgcgcggagaggtcctggacctctatccgccatccggacaggacaaccgggcc
gtgcgcgtgatgtttggctttgacgaagtggaacttctgaaaatttttgatgtcagcagc
cagatttcggaccaaaacatcgacggattttccctcttcccgctgaaggaagtactgtgg
aaagaggccgagcagaaatgcctgcgcaggcatctggaagacttgctgcttgaggcccga
ccctcggactttggctttgatccttcagagcagagcaatccggagtgggaagccttttgg
cagaaccaacaaaaccaaattgaggagctgctgtcccgtttggcccgtcaaggtgagacg
agccaaggtgaagtcaaggccgaagaactactctttccatttggccgggacaagccggcc
agtctgcaagactatatgggggaagactgccccattttgttttggggcatgcagcgcatc
gagcaacaggaagaggcgtacctgcacgagctggaagttttgtatcggcaaagtctgatt
ccctttgaagaacggaggggtggacaggatacgagagagtccggggaagcccgggggcag
gtacgaggtcccgaggcactgttccccgaactggtccaacgtaagttgcttcatcccaag
tgctttgctgtggatttgagtctggtgcacggtcgctgccgggcccccatcgtcgtcgat
gagttcgaagggcgaccttggccgctggaattggaaccaaccttgcaataccacggcaac
ttcaatcgctttagtgaagacctcaaagcttggctggagcaggactatcatgtggccata
ggttgttcgtccacggcccaggcccaacgcctcctccacctgctccgggattacgctgag
gatctgcacttctaccctgtcgagctgagccagggtgtgattttcccccggcagaagttg
gctttgctgcaagagtgggagattctgggaactgaaggccgggggagtggctccggtcgg
cacggcggaagcctggcctacggtggcgggaggcctggcaaggacagggaaaagaccgag
cgcatcgccaagcgtttgagccagagcgaagtcatcagttcttttgtcgacctgaaggag
ggcgacctggtcgtccacgttcagcacggcgtgggtcgtttcaaaggtattgagcgcatt
agtacctcgcgcatggagcgcgactacctggccattgaatattcggattccaacactctg
ttcgtgcctatagaacaggtcaacatggtgcagcattatattggcagtgagagtgccggt
ctgcgtctggaccgcattggaggcaaggcttggcaggagcgcaaggccaagacccggaag
gccgtggaagatttggccgaccggctgttgcgcctctacactcgccgcgcagcggctccc
ggccccggttgcccgcccgatgatgacctgatggaagaatttgaggctgattttccctac
gagccgaccggagaccagttgcgggctatcggagaaattaagggggatatggaagatccg
aagccgatggaccgactgttgtgtggtgatgtcggctttggcaagaccgaagtggcgatg
cgtgccggcttcaaaatggcctgtacaggccgtcaggtactggtgctttgtccgaccact
attctggcggagcagcattatcggaatttctccaagcgttttgcccgctttccgttgcgc
attgccatgctttcccgcttcgtggagtccaagcaacagaaagtggtattgggctcgctg
gaacgtggtgaagtagatatcctgatcgggactcatcgccttttatccaaagacattcac
ctgcgcaatctggggctgatcgtaatcgacgaagagcaacgtttcggtgtcaaacacaaa
gaacgcctgaagatgctcaaaacttcggtggactgcctggccatgtcggctacgccgata
cctcgtaccctgcacatgtcgctggtgcaaatccgggacatttccatgttggcgactccg
ccgggtggccgccacccggtggaaaccttcgtgcgtgagtttaacccggaaagtatcgcc
gaagccattcgtcgggaactgagccggggcggccaagttttttacctgcacaatcgcatc
gaaagcttggacgagattctgctgtttctgcgtgatttggtgccagaatccctgattgag
acggcccacggtcggatgggaagtaaggagctggaagacattatgtaccgcttcgtgcac
ggcggtttcaacgtcttattagccacagccatcatcgaaaacggcatcgacatccccaat
gtgaatactatcattattgatcgcgctgaccgctacggcatcggccaactctaccaattg
cgtggccgggtgggccgcgccgaccggctggcttatgcctacttgttctacccggatcgc
agtggtttgagtgatttggccctgaagcgattaaagatcatttccgatttcaccgaactc
ggttcgggcttcaaggtggcgatgaaggatttagaggtgcgtggtgcgggcaacctactc
ggaccggaacagtcgggcaacattcttgcggtgggttttgaaatgtataccggtatgttg
gccaaggcgatgcatgagcgcaagtatcgcctggaacaggaggaaggcggacagatatcg
gaggcagagccgatggaatacgacgaggaaatctccctggagctggactacagcggcttc
atcccggattcctatattgctgatgccactgaaaaaattgagttatataaaagaatatct
tctattagctctacggaaaggctgtctgaattttacgaagaaatctacgaccgctttggc
aatcctcctgaagaagtccactccctgttgtcgctttctgaagtgcgcattgtctgccgt
cgggtgggtattaatcttctgaaggaacgccaagaccaggtggaagtacaattttccaaa
gcccgacctttgccgttggaaaaaattatggagcaaatccggctctaccctaaagtcttt
cgcattgatcccaaacggagtgacactttgttgataaatttgcagtcctttatggaattg
gaggcacaggatctttgggcggctaagcaggagcgcaaaacgaagaaccggcagaagaaa
aaatcagggaatcgcaacgccgattatctgtcacaagaatctgtatcggaaacaggtaag
gaaacaggcccaattggggacaatcccctgttgagaaaaacggccgccttgcgccgggtt
ttgagttcttttcaaaacggagtttcggcagaataa
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