Candidatus Haliotispira prima: P0082_00845
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Entry
P0082_00845 CDS
T09917
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hpri
Candidatus Haliotispira prima
Pathway
hpri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P0082_00845 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpri03021
]
P0082_00845 (rpoC)
03400 DNA repair and recombination proteins [BR:
hpri03400
]
P0082_00845 (rpoC)
Enzymes [BR:
hpri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P0082_00845 (rpoC)
Transcription machinery [BR:
hpri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P0082_00845 (rpoC)
DNA repair and recombination proteins [BR:
hpri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P0082_00845 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WGK69435
LinkDB
All DBs
Position
215171..220129
Genome browser
AA seq
1652 aa
AA seq
DB search
MRDIQEFDSLKIRLASPEQIRSWSYGEVKKPETINYRSLRPEKDGLFCERIFGTTKEWEC
FCGKFKSIRYKGVVCDRCGVEITHSRVRRERMGHVELAAPVSHIWYYRTIPSSMGALLSL
SQSALRAVLYYEKYIVVDPGNTELELHQLLTEEEYSEARDRFGEAFNAGIGAECIKQMLE
NLDLDALSTELRAKMIEKGAKADKKLLKRIEIVENFNRSDNEVKWMILDVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLVLSAPEVIIRNEKCMLQEAVDALLDNSK
RKKVNKGPANRPLKSLSDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPTK
MALELYKPFIMRKLVEKEIVFNIKKAKILVEQTTTEVWEVLDEVVREHPVLLNRAPTLHR
LGIQAFEPILVEGKAIQLHPLVCHAFNADFDGDQMAVHLPLTQAAQVECWSLMLASKNLM
NPANGMSVVFPSQDMVLGIYLLTKPRKGDKGEGRHFSGFNEVLKALDLKQITHHSLIKVP
NPAFSKENAEVESRWLETTPGRVVFNMGIPNQVDFVNETLDDKGLRSLIEYSFEENGASI
TVELLDCIKEVGFRHATLLGCSIGIDDILIPIEKKDLIEQSNQAVVKIQEQYRSGHITNE
ERYNRVVEVWSKTNEDLTRLMMDLLSEDRQGFNNVYIMADSGARGSRNQIRQLAGMRGLM
AKPSGDIIELPIRSNFKEGLSVIEFFISTNGARKGLADTALKTADAGYLTRRLVDISQDV
VVNQDDCGTINGIVMSALKDGEEIVESLADRIRGSYTLERVKHPITGELILDVNEELTDM
LANEIEQIGIEEVRVRTVLTCEARYGVCCKCYGRDLSTRKTVNVGEAVGILAAQSIGQPG
TQLTMRTFHVGGTASTIAEDNKIALKYPVLVREIKGHYLDMGKDRLLFTRKGYIFVAKIL
ERHELAKGDKFLLEDGERVVKGVPIIESGGEVTEAQQTAFLVKQEKTLLLVAQDQRLEVR
NGSNVNVRPGQIVGIDEPVAVFDPFSDPIIAEQAGKVHFVDLINGVTLREELNEETGNIE
KKIAEQFSQSLEPRIELLDDKNEVIGNYYLPGGSYLSVEDGAVISAGRILAKLLKESAKT
QDITGGLPRVVELFEARRPKNATVLANITGTVHFRGLFKGKRLVIVEDRYGNESRHLIPQ
GRHLLVRDGDPVVVAEPLCDGPVDPHTVLDIQGENALQRFLVDEVQEVYRMQGVNINDKH
IGVIIRQMMRKVEVVDVGDTQFIYGHQVDKYTFRTENENVIGEGGRPAVAQPLLQGITKA
SLNINSWVSAASFQETTRVLTNAAIVGNVDPLNGLKENVIIGHVIPAGTGMRKYRDLQLY
TEDMEDLDAHVQEILEQRRIEQEEIERLALEQEAKEELILEDDPFPFFDEAPAELVKAPK
GESGSEDDLADMDDDDEDEADDDEDDEDDADRDDADRDDADSDDAEAGDEVDGEVNDAVA
ESGDAADSETVDKAADGIVGEVADAVEEGGETSDSETVDKVADAVEENSEVVDSETADDT
ADGIVGEVADTVEEGGETSDSETVDKVADAVEENGEIADSETADKAANEIGGEVRDAVEQ
SEQVADSEMADEADSRPAEGEAGNLKEEPGDN
NT seq
4959 nt
NT seq
+upstream
nt +downstream
nt
atgagagatattcaagagtttgacagcctgaaaatccgcctggcttcgcctgagcaaatt
cgcagttggtcttacggagaagtaaagaaaccggagacaattaactaccgcagcctgcgg
ccggaaaaagacggcttgttctgcgaacgcatctttggtaccaccaaagagtgggagtgt
ttttgcggtaaatttaaatcaatccgctacaaaggtgtggtttgtgaccgctgtggtgtg
gaaatcactcacagccgtgtgcgccgcgagcgcatgggccatgtcgaattggccgcgccg
gtatcgcatatttggtactatcgcacgattccctccagtatgggggccttgctcagcctg
tcccagagcgcattgcgtgccgtgctgtattacgaaaaatatattgtggtcgacccgggc
aataccgagttggaactgcaccagttgctgacggaagaagaatattcggaggcacgagac
cgttttggagaggccttcaatgccggcatcggtgcggaatgcatcaagcagatgttggaa
aatctggatctggacgctttgtcaacggagctgcgggccaagatgatcgagaaaggtgcc
aaggcagataaaaaattgcttaagcgcatcgagattgtcgaaaacttcaaccgttcggac
aacgaggtcaagtggatgattctggatgtcatccccgtcattccgccggatctgcggcct
atggtgcagttggacgggggccgcttcgcgacctccgacctgaatgacctgtatcgccgt
gtcatcaaccgcaacaatcggcttaagcgtctgctggtgctttcggccccggaagttatt
atccgcaatgaaaaatgcatgttgcaggaagcggttgatgcgctgttggataactccaaa
cgaaagaaagtaaacaagggcccggccaatcgcccgctcaagtcgctttccgacttgctc
aagggtaagcaggggcgttttcggcagaatttgctgggtaagcgcgtggactattccggc
cgttcagtgattgtggtcgggccacagctcaagctgcatcagtgtggtctgccgaccaag
atggctttggagttgtacaagccatttatcatgcgcaagctggtcgaaaaagaaattgtg
tttaacatcaaaaaagcgaaaattttggtggagcagacaaccaccgaggtctgggaagtc
ctcgacgaagttgtgcgtgagcaccccgtgttgctcaaccgcgccccgactttgcaccgc
ttgggtattcaggcctttgagccgatactggtagagggtaaggccattcagttacacccg
ctggtctgtcacgcttttaatgccgactttgacggcgaccaaatggccgtgcatttgccg
ctgactcaagcggcccaggtggaatgttggtctctgatgttggcctctaagaacctgatg
aacccggccaacggtatgtcggtggttttcccctcgcaggacatggtcttgggtatctac
ctgctgaccaagccgcgcaagggagacaaaggcgaaggccgtcacttttccggcttcaat
gaagttctcaaggcattggatctgaaacaaatcactcaccattcgttgatcaaagtgccc
aacccggctttcagcaaggaaaatgccgaggtcgaatcgcgctggttggagacgactccc
ggccgggttgtattcaatatgggcatccccaatcaggttgattttgtcaacgagacgttg
gacgacaagggcctgcgcagtttgatagagtattcttttgaagaaaacggggcctcaatc
acggtggagttactggactgtatcaaagaagtgggttttcgccacgctactttgctgggc
tgttccatcggtattgacgacatcctgattcccatagaaaagaaggatctgatcgaacaa
tccaatcaggccgtggtcaagatccaggagcaatatcgctccggtcacattaccaacgaa
gaacgttacaaccgcgtggtggaggtttggagtaagaccaatgaggatcttactcggctg
atgatggacttgttgtccgaagaccggcagggctttaacaatgtctatattatggcggac
tccggtgctcggggttcgcgcaaccagatccgtcagttggccggtatgcgcggtctgatg
gccaagccttcgggggacatcatcgagttgccgattcgctccaattttaaagaaggcctg
tcggtaattgaattctttatttccaccaatggtgcccgtaaaggtttggcagatacggcg
ttgaagacggcggatgccggctatttgacccgtcgtctggtcgatatttcacaggacgta
gtggtcaatcaggacgattgcggcaccatcaacggtatcgtgatgtcggccctgaaagac
ggcgaggaaattgtagagagcctggccgaccggattcgcggcagctacactttggaacgg
gtcaagcatccgattaccggcgagctgattttggacgtgaacgaagaacttacggatatg
cttgccaacgagattgagcagatcggcattgaagaggtgcgcgtgcgcaccgtgctgacc
tgtgaggcccgctatggcgtttgttgcaagtgctatggccgggacctttcgacccggaag
acggtcaacgtcggtgaggcggtaggtattctggctgcccagtcgattggccagccgggt
acgcagctaaccatgcgtacttttcatgtgggtggtacggcctctactattgccgaagat
aataagattgccctgaagtatcccgtgctggtgcgggagatcaaaggccattatctggat
atgggtaaggatcgtttattgtttacccgtaaaggctatatttttgtggctaagattctg
gaacgccacgaattggccaagggagacaaattcttgctcgaagatggcgagcgcgtggtg
aaaggtgtccccattatcgaaagtggcggtgaggtaacggaagctcagcagacggccttt
ctggtcaaacaggagaagactcttctgctggtggctcaggatcagcgtttggaagtgcgc
aatggttccaatgtcaacgtcaggcccggccagattgtcggtattgatgagcctgttgcc
gtgtttgacccgtttagtgatcctatcatcgctgagcaggcgggcaaggtgcattttgtc
gatttgattaacggtgtgacgttgcgtgaagagttaaacgaagagaccgggaatattgag
aaaaagattgcggagcagttctcccagagtttggaaccgcgcattgaattgttggacgat
aaaaatgaggtgattggcaactactacttgccgggtggttcctatctcagcgtggaagat
ggtgcggttattagtgccggccgtattttggccaagctgcttaaagaaagtgccaagact
caggatatcaccggcggtctgccgcgtgttgtcgagttgtttgaggcccggcggccaaag
aatgcgacggtgttggccaatatcaccggtacagtgcattttcgaggcttgtttaagggc
aaacgtttggtgattgtcgaggatcgatacggcaatgagagtcgccatcttattccgcag
gggcggcacctgttggtacgcgatggtgacccggtcgtggttgcggaaccgctctgtgac
ggcccggttgacccgcatacggttctggatattcagggggaaaacgctttgcagcgtttc
ctggtagatgaagtccaggaagtgtatcggatgcagggagtaaacatcaacgataagcat
atcggtgtgattatccgccagatgatgcgcaaggtcgaagtggtcgatgtgggtgatacc
cagtttatctacggccaccaagtggacaagtacactttccgcacggagaacgaaaatgta
atcggtgagggtggccgccccgctgtggctcagcctttgttgcaaggtatcaccaaggct
tcgctgaatatcaattcctgggtctcggcggcctcgttccaggagacgactcgtgttctg
accaatgcggcgattgtcggcaatgtggacccgctgaatggtctgaaggagaacgtgatt
atcggtcacgtgattccggccggtacggggatgagaaagtatcgggacttgcagctttat
acggaagatatggaagacttggatgcccacgtccaggaaattctggagcaacgtcgtatt
gagcaggaagagattgaacggttggccttggagcaggaagcgaaggaagagttgatcctc
gaagatgatccgttcccgttctttgatgaagcacccgccgagctggtgaaggctcccaag
ggggagagtgggtcggaagacgacttagccgacatggatgacgacgatgaggatgaagct
gacgacgacgaggatgacgaggatgacgctgaccgggatgacgctgaccgggatgacgct
gactctgacgatgctgaagcaggtgatgaggttgacggtgaagtcaatgacgcggtagca
gaaagcggagatgctgcggattccgagactgttgacaaagcggctgatgggattgtcggt
gaagtggctgatgcagtagaagaaggtggagaaacatcggattctgagactgttgacaaa
gtggctgatgcagtagaagaaaacagtgaagttgtggattctgagactgcggatgacacg
gctgatgggattgtcggtgaagtggctgatacggtagaagaaggtggagaaacatcggat
tctgagactgttgacaaagtggctgatgcagtagaagaaaacggtgaaattgcggattct
gaaactgctgacaaggctgctaatgagattggcggtgaagtccgtgacgcagtagaacaa
agtgagcaggttgcggactccgaaatggctgatgaggccgacagtcgtccggcagagggt
gaagccggcaatttgaaagaggagccgggcgataattag
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