Candidatus Haliotispira prima: P0082_04805
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Entry
P0082_04805 CDS
T09917
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hpri
Candidatus Haliotispira prima
Pathway
hpri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P0082_04805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpri03019
]
P0082_04805
03009 Ribosome biogenesis [BR:
hpri03009
]
P0082_04805
Enzymes [BR:
hpri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P0082_04805
Messenger RNA biogenesis [BR:
hpri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P0082_04805
Ribosome biogenesis [BR:
hpri03009
]
Prokaryotic type
rRNA helicases
P0082_04805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
DUF4831
Tho2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WGK70183
LinkDB
All DBs
Position
1284390..1285859
Genome browser
AA seq
489 aa
AA seq
DB search
MTKFTDFAFCPELQKAIDEAGFREPSPIQTQSIPLVLEGRDLVGQAQTGTGKTAAFGLPM
LELLSRQGNLNQYKNNVAAVVLVPTRELAIQVSEELSRFSQFLGLKTATVYGGQPYSAQI
RAMHNSPIVVATPGRFIDHLSSGKFDLKPRFVVLDEADEMLNMGFLEDIRKIFSYFPDER
QNLLFSATLPPSIKKLIGDILHQPEYVTLSRKNITAEHIEQSFYVVDEHERDDALIRLYD
ALLPTKSIIFCRTKKEVDRLAYFLTSQGHEARGLHGDMEQKNREAVILSFRQDKLEVLVA
TDVAARGLDVNDVSHVFNYHLPFDTESYVHRIGRTGRAGKSGMAISIVTPHEYRGLQRIN
EKLGGSLLPKTVPHSHEIRNKKISSFIEALYIQEIDERAYEILEVLKEEMELSTVAFKLI
SMLKDQVEVRGKAQIGKSEKELERLMSRPRYDRHGQNGKGGPNRYKQKGGQYRGKNSSYG
SHSKHRSRG
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaatttaccgactttgctttttgtcccgaactacaaaaagccattgacgaagcc
ggcttccgagagccaagcccgattcaaactcaaagcattcccttagtcttggagggccgc
gatttagtaggccaagcccaaaccggtacgggcaagacggcggccttcggcctgccaatg
ctggagctgctctcgcgccaaggcaacctaaaccaatataaaaacaatgtggccgccgtc
gtactggtgccaactcgcgagttggccattcaggtttccgaggaattgtctcgctttagt
cagtttctcgggctgaagacggcgacggtctatggtggccaaccctacagtgcccagatt
cgggccatgcacaattctcccatcgtggtagctacgccgggccgtttcatcgaccatctg
agcagcggaaaatttgatttaaaaccacgatttgtagtgttggatgaagcggacgaaatg
ttaaacatgggtttcctcgaagatatccgcaaaatcttttcctactttccggacgaacgg
caaaacctgctattctccgccactctgccgcccagcatcaagaaattaatcggtgacatc
ctccatcagccggagtatgtgactttgagccgcaaaaacatcacggcggaacatattgaa
cagagcttttatgtcgtagatgaacacgagcgggatgatgccttgattcggctctatgac
gctttgctgcccactaaatcgatcatcttctgccgcaccaaaaaggaggtggaccgactg
gcctacttcctgacttctcagggccacgaggcgcgcggcctgcacggcgacatggagcag
aagaaccgagaagccgtgatcctcagcttccgtcaggacaagctggaagttctggtggcc
acagatgtcgcggcacggggcttggatgtcaacgatgtaagccatgtctttaactaccac
ttaccgtttgacacagaaagctatgtacaccgcatcgggcgcaccggacgggcgggcaag
agcggtatggccatttccatcgtcacaccgcacgaataccgaggtttacagcgcatcaat
gaaaaacttggcggcagcctgctgcccaaaaccgtaccgcacagtcatgagatccgcaat
aaaaaaatatcgtccttcattgaagctctctatattcaggagattgatgaacgtgcctac
gagattttggaagtcctgaaagaagagatggagctgagcacagtcgcctttaaactgatc
tcgatgctcaaagaccaggtcgaagttcggggcaaagcacagattggcaaatcggaaaag
gaactggaacgtctgatgagccgcccgcgctacgaccggcacggtcagaatggcaaaggt
ggacccaaccgctataaacaaaagggcggccagtaccggggcaaaaattcttcatacggc
tctcattccaaacacagaagccggggctaa
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