Candidatus Haliotispira prima: P0082_05450
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Entry
P0082_05450 CDS
T09917
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
hpri
Candidatus Haliotispira prima
Pathway
hpri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P0082_05450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpri03019
]
P0082_05450
Enzymes [BR:
hpri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P0082_05450
Messenger RNA biogenesis [BR:
hpri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P0082_05450
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
WGK70306
LinkDB
All DBs
Position
1454872..1456740
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AA seq
622 aa
AA seq
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MKFEEFPLVPALQKAVAEIGFIDCTPVQEQSFTAYFEGKDIYAQSQTGTGKTAAFMLCGL
QELIRRNQAGEDREQGQKPEEELPEFAGDIKMLILSPTRELAEQIEQEGKLLARFLPLQI
AAFYGGVGYEKQRTHLSSGVQIITGTPGRIIDLAKSGELPLHHVQVIVLDEADRMLDMGF
IDDVRWIMSKLPPTKDRMTMLFSATLTAKVGNLTWEFMRANQVAEIIIEPEQITTENVEQ
ELYHVSNREKLRLLLSLIKKLEPESALIFCNTKSGASFLERRLRDNGYQIKALMGDLPQI
KRTQIVGQLKAGKLRFVVATDVASRGLHVDSLPLVINYDLPDEAENYVHRIGRTARAGAA
GKAISMACERYVYNLADIERYIENKIPVTWFPEEELIEDQSSGHRNDRSDREYQGNRRER
GESRSSSGRPPRSSNSSGSGSRERDGERRGRRQSEGSRDRSREGGGSGGKTSSGRRSNLP
KEPPKDKDERLKYYQQKYGENFGVEDGSKPTANTSHSRDGANRRRPQRSSNNGSSNGNGG
DKGRNNDNGNNRNDSRPNRGQNRNQNGRKYSERSPRRSSVPQEQRQNSQPRPISTPENTG
KQGTPAKPGKKPGLLQRLFGRK
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgaagaattccccctcgttcccgctttgcaaaaggctgtcgcagagattggt
tttattgactgcacaccggttcaggaacagagctttacagcatattttgaaggtaaagac
atctatgcccagtctcagacgggtacagggaagaccgcagcatttatgctgtgtggttta
caggaactgatccggagaaaccaagccggagaagaccgggaacaaggacaaaaaccagaa
gaagaactgccggaatttgccggtgacatcaaaatgctgattctcagcccgacccgcgaa
ctggccgaacaaattgagcaggaaggcaagctgctggcccgatttctgcccctacaaatt
gccgcattttacggcggagtcggttacgagaagcaacggacccatttgagcagcggagtc
cagatcatcacaggaacccccggccgcatcattgacttggcaaaatccggcgaattgcct
ctgcatcatgtacaggtcatagtgctggatgaggcagatcgcatgctcgacatgggtttt
attgacgatgtgcgctggatcatgagtaaactgccaccaaccaaagatcgcatgaccatg
ttgttcagtgccactttgactgccaaggtgggcaatctgacttgggaatttatgcgtgcc
aatcaagtagccgaaattatcattgaaccggagcagatcaccacggaaaacgtagagcag
gagttataccatgtcagcaaccgggaaaagttgcgcctgctgctcagcctgatcaagaag
cttgagccggaatctgccctgattttctgcaacaccaaaagtggtgccagttttctcgaa
agacgtttgcgcgataacggttatcaaatcaaggctctgatgggtgacctgccgcaaatc
aagcgcacccaaatcgtgggccagctaaaagcaggcaaattgcgttttgtcgttgccact
gatgtcgcttcacgcggcctccacgttgacagcctgcctctggttattaactacgatttg
cccgacgaagccgaaaactatgtgcaccgcatcggccgcacggcccgagccggggctgcg
ggcaaggcgatcagtatggcttgtgagcgttatgtttacaatctggcagacattgagcgt
tatatcgaaaacaaaattccggtgacttggttccctgaagaagaactgatagaagaccaa
agctccggtcatagaaacgacaggagtgacagggaataccaagggaaccgcagggaacgg
ggagagagcagaagctcaagcggtcgtccgcctcgttcttcaaactcttcaggttcgggc
tcccgtgagcgagacggagaaagacggggacgcagacaatcggaaggcagtcgggatcga
agcagagaaggcggcggaagcggcggaaaaacatcatccggtcgccggtccaacctgccc
aaagaaccgccgaaagacaaagatgaacggctgaaatactatcaacaaaagtacggcgaa
aattttggggttgaagacgggtctaagcccacagcaaatacctctcattcccgtgacggt
gccaaccgcagacggcctcaacgcagcagcaacaacggcagcagtaacggtaacggtggg
gataaaggcaggaacaacgataacggcaacaaccgtaatgattcccgcccaaaccgcgga
caaaacagaaaccaaaatggcagaaagtattcggagcgcagcccgcggcgttcttccgtg
ccacaggaacaacgtcaaaatagccaaccgcgaccaatcagtactccggaaaataccgga
aaacaagggactccggccaaaccgggcaagaaacccggattgttgcagcgtttgtttggc
agaaaataa
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