Halomonas profundus: LMS44_00795
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Entry
LMS44_00795 CDS
T08361
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
hpro
Halomonas profundus
Brite
KEGG Orthology (KO) [BR:
hpro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpro03021
]
LMS44_00795 (rapA)
Transcription machinery [BR:
hpro03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
LMS44_00795 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
ResIII
SNF2-rel_dom
DEAD
Helicase_RecD
Nitro_FeMo-Co
Motif
Other DBs
NCBI-ProteinID:
UEQ04431
LinkDB
All DBs
Position
complement(184957..187902)
Genome browser
AA seq
981 aa
AA seq
DB search
MSDFSPGQRWISDGEAELGLGTVLNCDARSVTILFSASQETRTYNTRQAPLTRVMFGSGD
RVLSADGWQIVVDDSKESNGLITYIGEDKEGNLRELPEAKLADTMQFDQARDRLLTGQVD
RNDWFDLRFRTLHHYQRIEQHSALGFSGPRIDLIPHQLYIANEVANRHAPRVLLADEVGL
GKTIEAGLILHRLLLNGRVERALILVPDSLTHQWLVELLRRFSLNVSLLDETQSQAHGSA
NPFESAQLVLASQGWLFANPQRQEQALASQFDLLIVDEAHHLDWSEEGSGPGYRCVEQLS
AVIPGLLLLTATPEQMGIKSHFARLRLLDSERYHDLERFKAEESHYTEVARAIDALEALP
DDPSARSDVSAVADDRDSQALLAILCNPEASKAQQDTARDQLSEALLDRHGTGRVMFRNS
RRHVGGFPERRLNLAPLALPSAYRRVVRRLERDDDYLDELLIETGMDHPDVLIYPDAAYR
ELSNDPLNGEDWWHIDPRVNWLLEKLSDDSESGFANEKVLVIAHHRETAEGLAEGLRVLG
GYHAPVFHEDLSLIERDRAAAAFADEDEGVQVLVCSEIGSEGRNFQFCRHLVMFDMPQHP
DQLEQRIGRLDRIGQRHAIELHIPTFEGSPGERLLRWYHEGMDAFSAPHGVGNELFDAFG
DALADALLDDEALDEIIAETRTMFSAKLAEHDAGRNRLLELNACRPARAQQVIDAVRELD
DDAALPRYLERALDIFGVDSQEIGKGLMHLQPSQHMLDGLPGLVKGEEGFTATYSRSQAL
ARDDVQRLSWEHPLLREMMGRVLDGTMGNSALALLRHDAIPSGRLMAELVFRTHCPAPKK
LHLNRFLPPTAVRLLLDESGANLTSKISFTGLGKNLQKVNKSLARDLIKSRHDQLRELLT
QGEGEAERQLPSIVENAEARMRTQLDAEIARLTALAEHNPAVRSAEIDALKDERKALSEA
IENTRLRLDSVRVIITVDADR
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatttttctcccggccaacgctggattagcgacggcgaagccgagcttgggctc
ggtaccgtgcttaactgcgacgcccgtagcgttaccattttgttcagtgccagtcaggaa
acccgtacctataacacccgccaagccccgctgacccgcgttatgttcggcagcggcgac
cgcgtactctctgctgacggctggcagatcgttgtcgatgacagcaaagagtccaacggc
ctgatcacctatatcggtgaagacaaggaaggcaatctgcgcgagctgcccgaggccaaa
ctcgccgataccatgcagttcgaccaggctcgcgaccgcctgctgaccggccaggtcgat
cgcaacgactggtttgatttgcgctttcgtaccctgcaccactatcaacgtatcgagcag
cacagcgcgctaggcttttccgggccgcgcatcgatctgataccccatcagctctacatt
gccaatgaagtggccaaccgccatgcaccccgggtactgctggcggatgaagtgggcctg
ggtaaaaccattgaagctggcctgattctgcaccgcctgctgctcaatggccgtgttgag
cgggcgctgattcttgtgcccgacagcctcactcaccagtggctggtcgagctgctgcgg
cgcttttcgctcaacgtctcgctactggatgaaacccagagccaggcccacggcagcgcc
aacccctttgagagcgcccagctggtgctagcgagccagggctggctatttgccaaccct
cagcgtcaagagcaggcactggccagccagttcgacctgctgattgttgacgaagcgcac
cacctcgactggagtgaagaaggcagcggccccggctatcggtgcgttgaacagctttcg
gcggtgattcccggcctgctgctgctcaccgcgacccccgaacagatgggtatcaagagc
cactttgcccgcctgcggttgctggatagcgagcgctaccacgatcttgagcgcttcaaa
gccgaagagagccactacaccgaagtggcccgcgccatcgacgccttggaggcactgcct
gacgaccctagcgcccgtagcgacgtctccgcggtagccgatgaccgcgacagccaagcg
ctgctggccatcctgtgcaacccggaggcaagcaaagcgcagcaggacaccgctcgcgac
cagctgagcgaagcgctgctggatcgccacggtaccggtcgagtgatgttccgcaacagc
cgccgtcacgtaggaggcttcccggagcggcgcttaaacctggcaccgttagcgctgcct
tcggcctaccgtcgcgtggtgcgccgcttagagcgcgacgacgactacctcgacgagctg
ttgatcgagaccggcatggatcaccccgacgtgctgatctaccccgacgcggcctaccgc
gagctcagcaatgatcccctcaatggcgaagactggtggcacatcgacccgcgggttaac
tggctactggaaaagcttagcgacgacagtgagagcggcttcgccaacgaaaaagtcctg
gtcattgcccaccaccgggaaaccgctgaaggccttgctgaagggctacgggtgctgggc
ggctaccacgcgccggtgttccacgaagacctctccctgatcgagcgtgaccgcgcggcg
gcggcgtttgccgatgaggatgagggcgtacaggttctggtctgctcggaaattggctca
gaggggcgcaacttccagttctgccgccacctggtgatgttcgatatgccccagcaccca
gatcagctcgaacagcgcattggccgcctggatcgcatcggtcagcgccacgctattgag
ctgcatattcctacttttgagggcagccccggcgagcgcctgctgcgctggtaccacgaa
ggtatggatgctttcagtgccccccatggggtcggcaacgagctgtttgatgcctttggt
gacgccctggctgatgccttgctggatgatgaggcacttgacgagatcatcgccgaaacc
cgcacgatgtttagcgccaagctggcggagcacgatgcgggccgcaaccgactgctggag
ctcaacgcctgccgccccgcccgcgctcagcaggtgatcgacgcggtgcgcgagcttgac
gatgacgccgccctgccgcgctatcttgagcgagcgttggatattttcggcgtggatagc
caggagatcggcaagggcttaatgcacctgcagcccagccaacatatgctggatggcctg
ccgggcctggttaaaggtgaagagggctttaccgccacctacagccgctcccaggcgctg
gcccgtgacgatgtgcagcggctctcctgggaacacccactgctgcgtgaaatgatgggt
cgggtgctggatggcaccatgggcaactcggcgctggcgctactgcgccacgacgccatt
cccagcggccgcttgatggccgagctggtgtttcgcactcactgcccggcacccaagaag
ctgcatcttaaccgcttcctgccacccaccgcggtgcgtttgctgctggatgaatcgggc
gccaacctgaccagcaagatctccttcaccggcttgggcaaaaacctgcagaaggtcaac
aagtcgctggcgcgggatttgatcaagagccgtcacgaccagctgcgtgaactgctaacg
cagggtgaaggcgaagccgagcgccagttgcccagcatcgtcgagaacgccgaagcgcgt
atgcgcactcagttggacgccgagattgcccgcttaaccgccctggctgagcacaacccg
gcggtgcgcagtgcggaaatcgacgcgctaaaagatgagcgcaaggcacttagcgaagcc
attgaaaacacccgcctgcggctggactcagtacgggtgattatcaccgttgatgccgac
cgctaa
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