Halomonas profundus: LMS44_01070
Help
Entry
LMS44_01070 CDS
T08361
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
hpro
Halomonas profundus
Pathway
hpro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LMS44_01070 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpro03021
]
LMS44_01070 (rpoA)
03400 DNA repair and recombination proteins [BR:
hpro03400
]
LMS44_01070 (rpoA)
Enzymes [BR:
hpro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LMS44_01070 (rpoA)
Transcription machinery [BR:
hpro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LMS44_01070 (rpoA)
DNA repair and recombination proteins [BR:
hpro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LMS44_01070 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Acyl-CoA-dh_C
Motif
Other DBs
NCBI-ProteinID:
UEQ04482
LinkDB
All DBs
Position
231655..232650
Genome browser
AA seq
331 aa
AA seq
DB search
MQRSVTEFLRPRDIKVEEISAHHAKIVLEPFERGFGHTLGNALRRILLSSMPGCAVVEAE
IAGVEHEYSALEGVQEDVIEILLNLKDVAIKMHSRDEAVLTLNKQGPAVVTAGDIALDHS
VEIVNPDHVIAHVNEGAELKIQLKVALGRGYEPADARGSDEESRAIGRLQLDATFSPVRR
VSYSVEAARVEQRTDLDKLIIDLETDGTLDPEEAIRRSATILQEQLAAFVDLEADKEQEV
EEEEDHVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLNE
IKDVLAARGLSLGMRLENWPPASLKDDKASA
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgttcagtgacagagtttctccgtcctcgcgacatcaaggtcgaagaaatcagc
gcacatcacgccaaaatcgtgctcgaaccgttcgagcgtggctttggtcacaccctgggg
aatgcactacgtcgcattctgctttcgtccatgcccggctgtgccgtggtagaggctgaa
atcgccggcgtcgagcatgaatacagtgcgcttgaaggggtgcaggaagatgtcattgaa
atcctcctgaacttgaaagatgttgcgatcaagatgcacagccgcgatgaggcggtgctc
acgctgaacaagcagggcccagccgtcgtcaccgctggcgacattgcgcttgatcatagc
gtcgaaatcgtcaacccggaccacgtcattgctcatgtcaatgaaggtgccgagctgaaa
attcagcttaaggtagcgctgggtcgtggctacgaaccggctgacgcgcgcggctctgat
gaagagtcacgtgccattggccgcctgcagctggatgccaccttcagccctgtccgccgt
gtttcctactcggttgaggccgctcgtgtcgagcagcgcaccgacctcgataagctaatt
atcgatctggaaaccgacggtaccctggatccggaagaggctatccgtcgcagtgcgacc
atcctgcaagagcagctggccgccttcgtcgacctggaagctgataaagaacaggaagtc
gaagaggaagaggatcatgtcgatccaattctattgcgccccgtagacgatcttgagttg
actgttcgtagcgcgaactgcctaaaagccgagaatatttactacatcggtgatcttatc
cagcgcacagaagttgagctgttgaagacaccgaacctcggtaaaaagtctttgaatgaa
atcaaagatgtattggcggctcgcggcttgtcccttggcatgcggttggaaaattggcca
ccggcaagcctgaaggacgacaaagcctccgcgtga
DBGET
integrated database retrieval system
