Halomonas profundus: LMS44_04835
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Entry
LMS44_04835 CDS
T08361
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
hpro
Halomonas profundus
Pathway
hpro02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
hpro00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LMS44_04835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpro03021
]
LMS44_04835
Transcription machinery [BR:
hpro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LMS44_04835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
HTH_23
Sigma70_ECF
HTH_11
GerE
HTH_28
Phage_terminase
Motif
Other DBs
NCBI-ProteinID:
UEQ05196
LinkDB
All DBs
Position
1060119..1060673
Genome browser
AA seq
184 aa
AA seq
DB search
MAAAPRSAEPAAYHTGCRDSLGELYHHHQPWLQQLLSHRLGCSESAADLAQDAFVRLLKT
PRHLDSFEGARAYLSRMAKGLCVDHWRRQDIERAWQQALAASAEAHLPSAEHQQIVIETL
CEIDRMLARLPEKVASAFLASQLHGKPYRQIAEELGVSERMVKKYMAQAMLQCALIEAGF
EASL
NT seq
555 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcaccccgatcagccgagcctgcggcttaccataccggctgtcgagactcc
ctcggtgagctgtatcaccaccatcagccttggttgcagcagttgctcagccatcggttg
gggtgcagtgagtcggcggcggatctggcacaggatgcgtttgtgcggttactgaaaacg
ccccgccacctggatagtttcgagggtgccagagcctatcttagccgcatggccaaaggg
ttgtgcgtggatcattggcgccgccaggatatcgagcgcgcttggcagcaagccctggcg
gccagtgctgaggcgcatttgccctctgccgaacaccagcaaattgtcatcgaaacactg
tgcgaaatcgaccgcatgctggcgcggctacccgagaaagtcgctagcgcctttttggct
tcgcagctacacggtaaaccctatcggcagattgctgaggagctgggggtttccgaacgc
atggtcaaaaaatatatggctcaggccatgctgcagtgcgcgttgatcgaagcgggcttc
gaggcgagtctctaa
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integrated database retrieval system
