Halomonas profundus: LMS44_06275
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Entry
LMS44_06275 CDS
T08361
Name
(GenBank) sigma 54-interacting transcriptional regulator
KO
K12146
hydrogenase-4 transcriptional activator
Organism
hpro
Halomonas profundus
Brite
KEGG Orthology (KO) [BR:
hpro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hpro03000
]
LMS44_06275
Transcription factors [BR:
hpro03000
]
Prokaryotic type
Helix-turn-helix
Other families
LMS44_06275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
PAS
PAS_9
PAS_8
PAS_4
AAA_5
AAA
Mg_chelatase
HTH_8
PAS_3
AAA_2
AAA_16
PAS_7
AAA_3
Motif
Other DBs
NCBI-ProteinID:
UEQ05473
LinkDB
All DBs
Position
1371421..1373367
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AA seq
648 aa
AA seq
DB search
MRPTLMDEPERHHVFALMGGFSPLAMMLVDPFADQLLAANHAACAMLNIDEAMPLEAPFS
HRLGASLPLWVSFTDEALTHKAAWSDDLVMLDMLRQPYRVEVYAQRIDDSAQLLLTLIDR
NKAEQRRAKAELGRQHRQGEVGWQRVEQVFERIEKQNQLILGAAGEGIYGLDAEGKTTFV
NPAAERILGWSTEDMVGHDAHLMFHHTHVDGSHFPVQQCPIHASFSDGQVHHVDNEVFWH
KNGEAIPVEYTSTPIFEMGRLVGAVVLFRDIRERKRAEQQLRDALAEVESLKQRLELENE
YLQEEIKAELNHRDIVGNSPAVAKLIQQIELVAPTSANVLISGESGTGKELIARAIHAGS
TRSDRPLIRVNCAAIPRDLFESEFFGHVKGAFTGAVQDRPGRFELAHGGTLFLDEVGEIP
LELQSKLLRVLQDQQFERVGDNRTREVDVRVIAATNRELRDMIDAGHFREDLYFRLNVFP
IDSVPLRKRIEDVPLLARHFLQRACLKFNKPGVRIPPAQLEILQRYPWPGNIRELENIIE
RQVIVTQDRRLMFDDLLSGEPSRSMGRAQPMPTLLHTSGEQSKATLLTEQALSQRRRAST
IAALEQARGKISGAGGAAELLGIKPTTLTSRLTKWGIDARGFRKRAPH
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
ttgagaccgacactaatggatgagcctgaacgtcatcatgtttttgctttgatgggtggc
ttttcgcctctggcgatgatgttggtcgatccgtttgccgaccaactgctcgctgcgaat
catgccgcttgcgcgatgctcaatattgatgaagcaatgcctttggaggcaccgtttagc
catcggttgggtgcttcgctgccactgtgggtgagcttcaccgatgaagcgctaacacac
aaagcggcctggtcggatgatctggtgatgttagatatgctgcgccagccgtatcgagtt
gaggtttatgctcagcgtatcgacgactctgcacagctgttactgacgctgatagaccgc
aataaagctgagcagcggcgagcaaaagcggaattaggccgccagcaccgccagggtgaa
gtgggttggcagcgggtcgagcaggtattcgagcggattgaaaagcagaaccaactaatt
cttggcgcagcgggcgaggggatttacgggctggatgccgaaggcaaaacaaccttcgtt
aatcctgccgccgagcgaattctgggctggagtaccgaggatatggtgggccacgacgct
cacctgatgttccaccacacccacgtcgatggcagccacttcccggtgcagcagtgccct
attcacgcctcgtttagcgacggccaggtgcatcacgtcgataacgaggtgttctggcac
aaaaatggtgaggcgattcccgttgagtacacgagtacaccgatttttgaaatggggcgt
ttggtcggcgcggtggtgctgtttcgtgatattcgtgagcgcaagcgcgctgagcagcag
ttgcgtgatgcccttgctgaggtggagtcactcaagcagcgcctcgaactggaaaatgag
tacctccaggaagagataaaagcggagctaaaccatcgcgatattgtcggcaatagtccg
gcagtggccaagctgattcagcagattgagctggttgcgcccaccagcgccaacgtgttg
attagcggcgagtcgggcaccggtaaagagctgattgcccgcgccatccatgcggggagt
acacgcagtgatcgaccgctgatccgcgtgaactgtgcggctattccccgcgatctgttt
gagagcgagttttttggccatgtaaaaggggcctttaccggcgcggtgcaggatcgccca
gggcgttttgagcttgcccacggcggcacgttatttttggatgaagtcggtgaaatcccc
ctggagctgcagagtaagctgttgcgggtgctacaggatcagcagtttgagcgcgtaggc
gataaccgtacccgcgaagtggatgtgcgggtgattgccgccaccaatcgcgaactgcgc
gacatgatcgatgcgggccactttcgcgaagacctctattttcgactcaatgtgtttcct
attgactcggtaccgctgcgcaagcggattgaggatgtgccgctattggcgcggcacttt
ttacagcgtgcctgcctgaaatttaataagccgggagtgcgcattccccccgcccagttg
gagattctgcagcgctacccatggccaggcaacattcgtgaactggaaaacatcatcgag
cgccaagtcatcgtgacccaggatcgacgcttaatgtttgatgacctgctgtcgggagag
ccgtcgcgctcgatgggccgtgctcaaccaatgccgacgttgctccacaccagcggagag
caaagtaaagcaacgctgctgactgagcaggcgctgagccaacgtcggcgggcgagcacg
attgccgctctggaacaggcgagaggtaaaatttctggggccgggggggcggcagaactg
cttggtattaaacccactacgctgacctcgcggctaactaaatggggtatcgatgcgcgg
ggatttcgtaaaagagcgccgcattaa
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