Halomonas profundus: LMS44_06445
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Entry
LMS44_06445 CDS
T08361
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hpro
Halomonas profundus
Brite
KEGG Orthology (KO) [BR:
hpro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hpro03016
]
LMS44_06445
Enzymes [BR:
hpro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LMS44_06445
Transfer RNA biogenesis [BR:
hpro03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LMS44_06445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF1822
Motif
Other DBs
NCBI-ProteinID:
UEQ05504
LinkDB
All DBs
Position
complement(1414208..1416148)
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AA seq
646 aa
AA seq
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MLQNNAMLAQLKQQIRQTTPRAEGVIKATDKGFGFLETDDGESYFVPPPAMKQVIHGDRV
EGVIHENGDKKSIEPEKLIEAGLDRFVARVQKREGRLSVVPDHPSIKNIIKARIKNSLDE
DTIADGDWVVARLVRHPLKADDRAFFAQIDELVAKSDDPAVPWRVTLARHALEQECPDAG
TDWPLMDEGLTREDLTATPFFTIDGEKTRDMDDALHVATRAEGGWRLSVAIADPTAYVEE
GHAADLEARTRAFTVYLPGQNVTMLPEQLADDLCSLWEDKERPALACTLDINADGSMGDY
RFFAANVKSHAKLVYDNVSDWIEGQGDWAPADEIAEQLTALRDLTEARTAWRNEHALVFK
DRPDYVFDLDPAGNVLAVRTEERRIANRMIEESMIVANACCADFLAQHIGHGIFNVHRAF
EPEKAEAAQEFLAGQEIVVEREALTELARYTELKRALESRDDAWLDARLRRFQGFTSMSA
QPGPHFGLGLAAYATWTSPIRKYGDMVNHRLIKRVLKGEQAPAEATQQLTEQLTERRRLN
RMAERDVKDWLYVRYLTPAAQNQDTFEAEIMAINRGGMRVRLVENGATAFVPAPLMHSDR
SKVVIDDKEGRIQIEGEERYKLGDPLRVVLTEAREETRSLVAKPTD
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcttcagaacaacgccatgcttgcccagctcaagcaacagattcgtcaaaccaccccc
cgcgctgaaggggtgatcaaagctactgacaaaggtttcgggtttctcgaaaccgacgac
ggtgaatcctatttcgtgccgccgcccgccatgaagcaggtgattcacggtgatcgcgtg
gaaggcgtgattcacgagaacggtgacaaaaagtccattgagccggaaaagctgattgaa
gcgggtcttgatcggtttgtcgcccgggtgcaaaagcgcgaaggtcgcctatctgtcgtc
cccgaccatccgtcgattaaaaatattatcaaggcgcggataaagaacagccttgatgag
gacaccattgctgacggcgactgggtcgttgcccgcttggtacgccatccgctaaaagcc
gatgaccgcgccttctttgcccagattgatgagctggtggctaaaagcgacgaccctgcg
gtgccgtggcgcgttacgctggcacgccatgcgctggaacaagagtgccccgacgcgggc
accgactggccgctgatggatgaaggtctgacccgcgaagacctaaccgctacgcccttc
ttcaccattgatggtgagaagacccgcgatatggatgatgcgctgcacgtggctacccgt
gcggaaggcggctggcggttgagcgtagcgattgccgaccccaccgcttatgtggaagag
ggccatgcggctgatttagaagctcgcactcgcgcctttaccgtttaccttcccggccaa
aacgtcactatgctgccagagcagctagcggatgatctctgttcgttgtgggaagacaag
gagcgccccgcgctggcctgtacgctggatattaatgccgacggcagcatgggcgattac
cgcttttttgcggcgaacgttaaatctcacgccaagctcgtttacgacaacgtctccgac
tggatcgaaggtcaaggcgactgggcacccgcggatgagatcgccgagcagcttactgcg
ctgcgtgatttgaccgaagcgcgtaccgcttggcgcaatgaacacgcgctggtgtttaaa
gaccgtcccgactacgtgtttgatctcgatcccgcgggtaacgtattggcggtgcgcacc
gaagagcgccgcattgccaaccgcatgatcgaagagtcgatgattgtggccaacgcctgc
tgcgcggacttcctggcccagcatatcggccacggtatctttaacgtgcaccgcgccttt
gagccggaaaaagccgaagctgcacaggagtttctggcaggtcaggagattgtggttgag
cgcgaagcgctcaccgagcttgcccgctacaccgagcttaagcgtgcactggaaagccgc
gacgacgcctggctggatgcgcgcctgcggcgcttccagggttttaccagcatgtcggcc
cagcccggcccgcactttggcctgggcctagccgcctacgctacctggacgtcgccaatt
cgtaagtatggcgatatggtcaaccaccgcctgatcaaacgcgtgttgaaaggcgaacag
gcccccgccgaagcgacccagcagctcaccgagcagttgacggaacgccgtcgcttgaac
cgtatggccgagcgcgacgtgaaagactggctctacgtgcgttacctgacgcccgctgcg
cagaaccaggatacgtttgaggccgaaatcatggccatcaaccgtggcggcatgcgcgtt
cgtctggttgaaaacggcgcaacggcgtttgtgcccgcgcccttgatgcacagtgaccgc
agcaaagtggtcattgacgataaagagggccgtatccagatcgagggcgaagagcgttac
aagcttggtgatccgttacgcgtagtgctcaccgaagcacgtgaagagacccgctcgctg
gtggcaaagcccactgattga
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