Halomonas profundus: LMS44_08605
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Entry
LMS44_08605 CDS
T08361
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
hpro
Halomonas profundus
Pathway
hpro02020
Two-component system
hpro02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpro00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LMS44_08605
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LMS44_08605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpro03021
]
LMS44_08605
Transcription machinery [BR:
hpro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LMS44_08605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
FAA_hydrolase_N
Motif
Other DBs
NCBI-ProteinID:
UEQ05917
LinkDB
All DBs
Position
complement(1939005..1940420)
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AA seq
471 aa
AA seq
DB search
MVMKASLQLRIGTQLTMTPQLQQAIALLQLSTLDLRQEIQQALDANPMLEQEDEFSEQAV
SEPKEEEWSESIPTELSVDSDWSDTYQDMGSQGGSSSEGPDFERQAAGQSLHGHLLWQLA
MTDFSAREQLVAESLIDALDANGYLTQPLNDIREGLRAQGIDGLSQREVETILLKLQQFE
PTGIFARDLRECLMLQLAALPDNTPLLVPARRLVRQFLEALGKDDMRLLKRRLGLDDEQL
ADVILLIRSLDPRPGSAYGDTDDSYVTPDLVVRHDNEGWHLELNPEALPRLRIQPDYASL
IKRADKSDDNQFLKEHLQEARWLIKSLSSRNDTLLRVGREIITRQIGFLEHGEEAMKPLI
LADIAEAVEMHESTISRVTTQKYIHTPRGVFELKYFFSSQVSGQDGDSHSSTAIRARLKK
LIQEEPPGKPLSDSRLVTLLGEGGIQVARRTVAKYREAMGIPSSSERRRLR
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggtcatgaaagcttctctccaactgcgtatcggcacacagctgaccatgacgccccag
ttgcagcaggccattgcgctgctgcaactctctacgctggatcttcgtcaagaaattcag
caggccctcgatgccaatcccatgctggagcaggaagatgaatttagtgaacaggctgtc
agcgagcctaaggaagaagagtggtcagagagcatccctactgagctctcggtagatagc
gactggtcagatacctatcaagatatgggaagccaggggggcagcagcagcgaaggcccc
gactttgagcgccaggcagccgggcagagccttcatggccacctgctgtggcaactcgcc
atgaccgattttagcgctcgcgagcagcttgtcgcggaaagtttaatcgacgcgctagac
gccaacggctacctgacccagccgctcaacgacatccgtgaagggcttcgtgcccagggc
attgacgggctaagccaacgcgaagtggaaaccattctactcaagctccagcagtttgag
ccgaccggcatatttgcccgtgacttgcgtgaatgcttgatgctgcagctcgccgctctc
cccgataatacgccactgctggttcccgcccgccgcttggtgcggcagtttctcgaagcg
cttggcaaagacgatatgcgtctgctgaaacgccgtctagggctcgacgacgaacagctg
gccgatgtcatcctgcttattcgcagcctagacccacgcccaggcagcgcctacggcgac
accgatgacagctatgtcacccccgatctagtcgtccgccacgataatgaaggctggcat
ttagagctcaaccccgaggccctgccacggctgcgcattcagcccgactacgccagcttg
attaagcgtgcggataaaagcgatgacaaccagtttctcaaagagcacttgcaggaagcg
cgctggttgatcaagagcctctctagccgaaacgatacgctgctgcgtgttggtcgcgaa
atcattacccgccagattggctttttagagcacggcgaagaagccatgaaaccactgata
ctggccgacattgccgaagccgtggagatgcacgagtcgactatttcacgggtaacgacg
caaaaatatatccatacaccccgtggtgtgtttgaactcaaatactttttctcaagccag
gtgagcggtcaagatggcgacagccactccagcaccgccatccgtgcacgactcaagaaa
ctgattcaagaggagccgcccggcaagccgctttcagacagccgcttagtgacgctatta
ggcgaaggagggattcaagtggcgcgtcgtacggtggcgaaataccgtgaagccatgggc
attccctcttccagtgaacggcgtcgtttgcgctaa
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