Halomonas profundus: LMS44_09020
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Entry
LMS44_09020 CDS
T08361
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hpro
Halomonas profundus
Pathway
hpro03420
Nucleotide excision repair
hpro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LMS44_09020
03430 Mismatch repair
LMS44_09020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpro03400
]
LMS44_09020
Enzymes [BR:
hpro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMS44_09020
DNA repair and recombination proteins [BR:
hpro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LMS44_09020
MMR (mismatch excision repair)
Other MMR factors
LMS44_09020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_12
PhoH
ResIII
Motif
Other DBs
NCBI-ProteinID:
UEQ05997
LinkDB
All DBs
Position
2020806..2023016
Genome browser
AA seq
736 aa
AA seq
DB search
MKLTAEQQAVVNHQAGHARVAAVAGAGKTTTMAARVLHLLAGGVPPKRILVLMFNRSAKD
DFQRRLAAMAPAGQALPDVRTFHSLGHRLTQSLCRWGALAPRQLLSADWQLERLLRQASI
NVLRDAVERRDAALEGDRLETLAHFCGLVKAEMITPEALYERLNFDPDTDYFPAAFAEAE
RLLEAEGVMTYADLLYRPLLALEADSALRGRVEGFLDHVIIDEYQDINAAQQRLLSVLVG
TRAEVMAVGDANQCIYEWRGAKPDTMLENFAATFGEATDYPLSTTFRHGHALALAANHAI
AANQRRPNQLCLAAANNPETRVSVGQGSRLLLDALMDWQAQGRAFNEASLLVRSWALSVP
FQLALLQAGIPFRLQREDRFVFRLPLVQALAGYLKLSRRPDLLRDPQQLLLLLSQPPPFV
ARERLQRLAHQLATTQQWPERHDAMLTALKPIQRRTLKKRWLLLCELPQLSAWPPAKLLR
HVVESIDAEKTLKRAAARRDKGEEDVRLLDVLIEQAQSVQDPDAFIELLERPVENQAGGV
LISTVHGAKGLEWPLVAVAGVNEEDFPHYSRDNPLSDERLEEERRLFYVAITRAQEQLLV
LHDGGVHRPSRFIAESAWQDSMRVASCLASTSAPAATLQVTSVGLVERYLARLGRDDIAL
APAQVDESKAGYSAEANFYPGQRLHHAVFGVGEVAAVEGSASDPVIDVRFDQAGRRRLIA
RRAPIELLENGSTLAG
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
gtgaagttaactgctgaacagcaagctgttgttaatcatcaggccgggcatgcgcgcgtg
gcagcggtggccggggcaggcaaaaccaccaccatggccgctcgggtgctgcatctattg
gccggcggtgtaccgccaaaacgtattttagtgctgatgtttaaccgctcagcaaaggat
gattttcagcgtcgtttagccgcaatggcacctgccgggcaggcattgcccgatgtccgc
accttccactccctggggcaccgcttgactcaaagcttatgccgctggggggcgctagcg
ccgcgccagctattatccgccgattggcaattagagaggctgcttcgtcaggcaagtatt
aatgtactgcgtgatgccgttgagcgccgagatgctgctctggaaggggatcggctagaa
accttagcccacttttgcggcttggttaaagcagaaatgattaccccagaggcgctctat
gagcggctgaattttgatccagacaccgactatttcccagcggcgtttgccgaagcagag
aggctattggaagcggaaggcgtgatgacttatgccgatctgctttatcgtccgctgttg
gcgctagaagcagatagtgctttacgtggtcgcgtcgaagggttcctcgaccatgtcatt
attgatgagtatcaggatattaacgccgcacagcagcgacttttatctgtgttggtgggc
actcgtgccgaggtaatggcagttggcgatgccaaccagtgtatttacgagtggcgcggt
gccaagcccgacaccatgctggaaaatttcgccgccacctttggcgaagcgaccgattac
ccactatcaaccaccttccggcacggtcatgcgttggcgctggctgctaaccatgccatt
gccgctaaccagcggcgtcctaatcagctatgccttgcagcggctaataacccggagacc
cgcgtctcagtcgggcaggggagccgtttgctacttgatgcgttgatggactggcaggcc
cagggacgagcgtttaacgaagctagtttgctggtacgcagttgggcgctttcggtgccg
tttcaactggcgctgctacaagcagggattccatttcggcttcagcgcgaggatcgtttt
gtgtttcgtctgccgctggtgcaggccttggcgggctatttaaagctgtcgcgtcgtcca
gatcttcttcgcgacccgcagcaactgttactgctgctttcacagccgccccccttcgtt
gcccgtgagcggcttcagcgtttggcgcaccaactggcgactactcagcagtggcccgag
cggcatgacgccatgttaacggcgttaaagccgatccagaggcgcacgctgaaaaagcgc
tggctgctgctttgtgagctaccacagctgagtgcatggccacccgctaagttgctacgc
catgtggtggaaagcattgatgctgaaaaaacgcttaagcgtgcggcagcgcggcgggat
aaaggcgaagaggatgtacgcttactcgacgtgctgatcgaacaagcgcaaagcgtgcaa
gacccggatgcctttatcgaacttcttgagcgcccggtagaaaatcaggcgggtggtgtg
ctgattagcactgtgcacggggccaaagggctggagtggccactggtcgcggtagccggt
gttaacgaagaagactttcctcactatagccgcgataacccgctcagcgatgagcggctt
gaggaggagcggcggctcttctacgtggcaattacccgcgcccaggagcagctattagtg
cttcatgatgggggcgtgcaccggccgagtcgctttattgccgaaagcgcctggcaggat
agcatgcgggttgcctcctgcttggccagtaccagtgcgcccgcggcgaccctgcaagtg
acatcggtgggcctggttgaacgctatctggcgcggttagggcgagacgacattgcgctt
gcgccggcacaggttgatgagtccaaagcgggttattcagcagaggcaaatttctaccct
ggtcaacggcttcatcacgcggtatttggcgtaggcgaagtggcggcggtggagggaagc
gccagcgacccggtcattgatgtgcgttttgatcaggcagggcgaaggcggctcattgcc
cgccgcgcacccattgagctactcgaaaatggctcaacgcttgctgggtaa
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