Halomonas profundus: LMS44_12895
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Entry
LMS44_12895 CDS
T08361
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpro
Halomonas profundus
Pathway
hpro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LMS44_12895 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpro03400
]
LMS44_12895 (mfd)
Enzymes [BR:
hpro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMS44_12895 (mfd)
DNA repair and recombination proteins [BR:
hpro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LMS44_12895 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UEQ02197
LinkDB
All DBs
Position
2843933..2847382
Genome browser
AA seq
1149 aa
AA seq
DB search
MPTFSLLEPPQPQGTRDTLYWTSPPGSATALALSRVAAKAPLLVITPNTASAQRLEQDLY
FYSDVPVLPFPDWETLPYDSFSPHQDIVSARLRTLRQLQDGVRGIVLVPINTLMQRLPPV
EYIAGRVMTLKTGERLNREAFRESLSRAGYRAVETVYEPGEYAMRGALIDLFAMGMDEPI
RIDLFDDEIDSLRHFDPGSQRSTDKLESLELLPAHEYSLSRSAIACFREQFETLFDVDPR
QCPLYNDALKGIPSPGLEHYLPLFFEHTASLFDHLTDDTRVALLPGVFAAAEQHWQSIDA
RYVNLGVDPTRPLLPPHRAFFPVNDVFSAIKACPRIELTEDSEQRHAQQPEAAPLPTLSI
SARAKQPLAELSAFLHSHAQTRVLFVAESRGRREALEEILSPLQLSLPHTDSFHDFLASD
HTYAITEGLVDSGLWLNNPSIAVISETELFGDVVRQSRRREKATDDNELAVRHLSELREG
APVVHQAHGVGRYLGLETLEAGGQANEFLALSYADGAKLYVPVDSLHMISRYSGAGDELA
PLHKLGSDQWEKARRKAAEKIRDTAAELLDVYARREAQQGVVYEAPGEEYLRFAGNFPFE
ETADQHAAIEAVISDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTL
LARQHFENFRDRFADTAVNIGLISRFTSGKEVTQTLESIKSGQTDIVIGTHKLLAKSVEL
PKMGLLIIDEEHRFGVAQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPP
ARRLSVKTFVQQHDTSIIKEALLREILRGGQVYVLHNEVKTIENSAEQIRELIPEARVAV
AHGQLPERSLERIMSDFYHRRFNVLVCSTIIETGIDVPSANTIIIERADKFGLAQLHQLR
GRVGRSHHQAYAYLLTPPPKAMTRDAIKRLEAISASDDLGAGFTLASHDMEIRGAGELLG
DEQSGQMETIGYTLYMEMLDRAVKAIRAGKTPNIDAPFNTGVEINLNLPALIPSDYIHDV
QQRLVMYKRIANTQSDSELKELQVELIDRFGLLPNPLKNLIRQTKLRHRAEQLGISKIEA
GESRGRVLFDSSTQVDPLTLVTLIQTSPKHYRLDGSDTLRFELPMESVDKRFQQLENLLS
TLNQKVAAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgccgacattctctctgctcgaaccgccccagccccaagggactcgcgatacgctctac
tggacatcgccgccgggtagcgcgactgcgctggcactctcccgcgttgctgcaaaagct
ccgctattggtgatcactcccaatacggccagcgcgcagcgtcttgaacaagatctctat
ttttatagcgacgtaccggtactgcccttccccgactgggaaacgctgccctacgacagc
ttttcaccccatcaggatattgtctcggcgagactgcgtaccctgcgccaactgcaagat
ggcgtgcgcggcattgtgctggtgccgatcaacacgctgatgcagcgcttgcccccggtt
gagtacattgccgggcgggtcatgacactcaaaactggcgagcgcttgaatcgcgaagcg
tttcgggaatcgctctcccgagcgggctatcgcgctgtcgaaacagtctatgagcccggc
gaatacgccatgcgcggtgcgctgattgacctgtttgcgatgggtatggatgagccgatc
cgtattgacctgttcgacgacgagatcgattcgctgcgccacttcgaccctggcagccag
cgctcgactgataagcttgaatcgctagaattgctacccgcccacgagtactcgctaagc
cgcagcgcgattgcctgttttcgtgagcagtttgaaaccctgttcgacgttgatccgcgg
caatgccctctttataacgatgcgttgaaaggcattccttcaccggggcttgagcactat
ttaccactgttttttgaacacaccgcatcactgtttgaccacctgaccgacgatacacga
gtcgcactgctgccgggagtttttgctgccgccgagcagcactggcagtcgatcgacgct
cgctacgtaaacttgggcgttgacccaacccgcccgctgctgccaccgcaccgagcgttt
ttcccggtcaacgatgtattctcggcaatcaaagcctgcccgcgaatagagttaaccgag
gatagcgagcagcgccatgcgcaacagcctgaagccgcaccgcttcccacactctctatt
agtgcccgcgccaagcagccattggcggagctgtcagcatttttgcactcccatgcccaa
acccgggtactgtttgtggcggagtcgcggggtcgccgggaagccctggaagagatcctg
tcgccacttcagctctcgcttccgcataccgatagcttccacgactttctcgctagcgat
catacctatgcaattacggaaggtttggtcgacagcggcttatggctaaataatccaagc
attgcggtaattagtgaaaccgagctgtttggtgacgtggtacgtcagagccgtcggcgc
gaaaaagccacggatgacaatgagcttgcagtacgccacttgtcggagctgcgcgaaggc
gcgccagtggttcaccaagcccacggcgtgggccgctatttagggctggaaaccttagag
gccggcggccaggcaaatgagttcctggcgctctcctacgccgatggtgccaagctttat
gtgcctgtcgacagcctgcatatgatctcccgttacagcggggccggtgacgaactggcc
ccgctgcataagctcggttcggaccagtgggaaaaagcccgccgcaaagccgccgaaaaa
attcgcgataccgctgcagagctgctggatgtctacgcccgccgggaagcccagcaaggg
gtggtctatgaggcgccaggcgaggagtatctgcgttttgcgggtaacttcccatttgaa
gagaccgctgaccagcacgcggcgattgaagcggtcatcagcgatatgacctccccgcag
cccatggatcgcgtggtgtgcggcgatgtcggcttcggcaaaaccgaagtggccatgcgc
gcggcatttttggccgtacagtctggccgccaagtggtggtattggtgcccactacgctg
ctggcgcgccagcacttcgagaacttccgcgaccgctttgctgacaccgccgtcaatatt
ggcctgatctcacgctttaccagcggcaaagaggtcacccagacactagagagcattaaa
agcggccaaacggatatcgtcatcggcacccataaactgctcgccaaaagtgttgagctg
cccaaaatgggcctgctgatcatcgatgaggagcaccgcttcggggtcgcgcaaaaagag
aagctcaaaacgctgcgtgccgaagtcgatattttgacgctaaccgcgacccctattccg
cgcacgctcaatatggccatgagcggcatccgtgatctgtcgattatcgctacgccgccc
gcccgccgtctgtcggttaaaacctttgttcagcagcacgacaccagtatcatcaaggaa
gccctgctacgtgaaatactgcgtggtgggcaggtctatgtactgcataacgaagtcaaa
accattgaaaacagtgccgaacagattcgtgaactaatccccgaagcgcgggtagcggtt
gcccacggccagcttcccgagcgcagcctggaacgcattatgtcggacttctaccaccga
cgctttaacgtgctggtgtgttcgaccatcattgaaaccggcattgatgtacccagcgcc
aacaccattattatcgaacgtgctgataaatttggcttggcccagctgcaccagctgcgg
ggccgggtcggccgtagtcaccatcaggcgtacgcctacctattaacaccaccgcccaaa
gcgatgacccgtgatgctatcaagcgtctggaagcaattagcgcttcggatgatctaggc
gctggctttaccctggccagccacgatatggaaatccgtggcgcgggtgaactgctgggg
gatgaacagagcggccagatggaaaccatcggctacaccctctatatggagatgctggat
cgagcggtgaaggccattcgcgcgggtaaaacgcccaatatcgatgcgcccttcaatacc
ggcgtggaaatcaacctcaacctgcctgcgctgattccaagtgattatattcacgatgtt
cagcagcgcctggtgatgtacaagcggattgccaacacccagagcgatagcgaacttaaa
gagttacaggttgagctgatcgaccgctttggcttgctgcccaacccgttgaaaaacctg
attcgccagaccaagctgcgccaccgtgccgagcaactgggaatcagcaaaatcgaggct
ggcgagagccgcggtagagtattgtttgatagcagcacccaggtggatcccttaaccctg
gtgaccctcattcagacgtcaccaaagcactatcgtttagatggctctgacaccttacgg
tttgaattaccaatggaaagtgtcgacaagcgcttccagcaacttgaaaacctacttagc
acccttaaccaaaaagtagcggcggcgtga
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