Halomonas profundus: LMS44_12925
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Entry
LMS44_12925 CDS
T08361
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hpro
Halomonas profundus
Brite
KEGG Orthology (KO) [BR:
hpro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpro03032
]
LMS44_12925 (topA)
03400 DNA repair and recombination proteins [BR:
hpro03400
]
LMS44_12925 (topA)
Enzymes [BR:
hpro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LMS44_12925 (topA)
DNA replication proteins [BR:
hpro03032
]
Prokaryotic type
DNA Topoisomerases
LMS44_12925 (topA)
DNA repair and recombination proteins [BR:
hpro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LMS44_12925 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UEQ02202
LinkDB
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Position
complement(2851088..2853715)
Genome browser
AA seq
875 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGNDFIVKSSVGHIRDLPTSGSGKAASDPKERARQAAATR
KMSAEEKEEYKKRKSQDQLIRRMGIDPNNGWEARYEVLPGKEKVVAELKKLAEKADAVYL
ATDLDREGEAIAWHLRETIGGDDSRYKRVVFNEITKNAIQDAFKAPGALNIPRVEAQQAR
RFLDRVVGFMLSPLLWAKVARGLSAGRVQSVAVRLIVEREREIRAFIPEEFWDVHADLAS
PEGELVRFALVRQDGKAFKPTSEKDTLARIEQLRKAKLAITSREDKPTSSKPTAPFITST
LQQAASGRLGFSVKKTMTMAQRLYEAGYITYMRTDSTNLSKDAVEGVRSYIGEEFGERYL
PEAPNRYSSKESAQEAHEAIRPSSVERKASDLAGMERDAERLYELIWRQFVACQMTPAEY
LSSTLSVEVDGYELRAKGRVLKFDGYTRVMKPSGKNEDQSLPDLPKGTPMALEALDPQQH
FTKPAPRYTEASLVKELEKQGIGRPSTYASIISTIQDRGYVKLENRRFYAEKLGDIVTER
LKESFPDLMDFSFTARMEDSLDEVAEGERNWQALLDAFYEEFREELAKAESEDGMRPNQP
VPTDIDCPSCGRHMQIRTASTGVFLGCSGYNLPPKERCKTTIDLIPGEEAVAEDAGEEAE
TNALRAKRRCPKCGTAMDNYLIDETRKLHICGNSPDCDGYEVESGKFKIKGYDGPIIECD
KCGSEMQLKSGRFGKYFGCTNSECKNTRKLLKSGEVAPPKMDPIPMPELACQKVDDHYVL
RDGASGLFLAASKFPKNRETRPPLVKELKAHADELPEKYHFILKAPSEDPDGRPAQIRYS
RKSKEQYVMTDEEGKATGWKAMFDAGKWHVEDKRK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagtcactggtcatcgtcgagtcgccagcgaaagcgaagacgattaacaaatat
ctcggcaacgatttcatcgtgaagtcgagcgtgggccacattcgtgacctgccgaccagc
ggctcaggtaaggcagcctccgaccccaaggagcgcgcgcgccaggccgcagcgacacgc
aagatgtcggcggaagagaaagaagaatataaaaaacgtaaaagccaagatcagctgatt
cggcggatggggattgaccccaacaacggctgggaagcccgctatgaggtgctgcctgga
aaagagaaagtcgttgccgagctaaagaagctggctgagaaggctgacgctgtctacctc
gcaacggatttggatcgcgaaggggaagccattgcttggcacctgcgcgagaccatcggt
ggcgatgacagccgttacaaacgcgtggtgttcaacgaaatcaccaaaaacgcgattcaa
gacgctttcaaggcgcctggcgcgctcaatatcccccgggtagaggcgcagcaggcaagg
cgtttcctggatcgcgttgtgggctttatgctttcgcctctactgtgggcgaaagtagcg
cgcgggctgtcggctggccgcgtacagtcagtcgcggtacgtctaattgttgagcgcgag
cgcgaaatccgtgcctttattcctgaagagttttgggatgtgcacgcggatttggcctct
cctgagggtgaactggtgcgttttgccctggttcgtcaggatggcaaggcctttaagcct
acctccgaaaaagacacccttgcgcgtattgagcagcttagaaaagccaagctggcgatt
acctcacgggaagacaaacccaccagttcaaagcccacggcaccctttattacctctacg
ctgcagcaagcggcgagtggccggttaggtttttctgtgaagaaaaccatgaccatggct
cagcgcctctatgaggcgggttacatcacctatatgcgtaccgactccaccaacttatcg
aaagatgcggttgagggtgtgcgtagctatatcggtgaagagttcggcgaacgctacctg
cccgaagcacctaatcgttatagcagcaaagagagtgctcaagaggcccatgaggcgatt
cgcccttccagtgtcgagcgtaaggcttccgatctggccggaatggagcgggatgccgag
cgtctctacgagctgatctggcgtcaatttgtggcctgccaaatgacccctgcagagtac
ctttcaagcacgctgagtgttgaagtcgatggctacgagctacgtgccaaaggacgtgta
ctgaagtttgatggttatacccgggtgatgaagcctagtggtaaaaatgaagatcagagc
ttaccggacttgccaaaaggtacgcctatggcactggaagcgctcgatcctcagcagcac
tttaccaagccagcaccacgctacaccgaagcaagcctggtcaaagagcttgaaaagcag
ggcattggccgaccgtcaacctacgcttcaatcatctcaacgatccaggatcgcggctat
gtgaagctggaaaaccgtcgtttctatgccgaaaagctgggcgatatcgtcaccgagcgg
ttgaaagagtccttccctgatttgatggacttctcgttcactgcccgcatggaagatagt
ctggatgaggtcgccgaaggcgaacgcaactggcaggcgctgctggatgccttctacgaa
gaattccgtgaagagctggccaaggctgagagcgaagatggcatgcgccccaatcagccg
gtgccaacggatatcgactgcccaagctgtggtcgtcatatgcaaattcgtaccgcttcc
accggggttttcctgggttgtagtggctacaatttgccgcccaaagagcgttgtaaaacc
accattgacctgattcctggtgaagaggcggtggccgaagacgcgggagaagaggccgaa
accaatgcgctgcgtgccaagcgtcgctgccccaagtgtggcacggcgatggacaactac
ctaatcgatgaaacgcgtaagctgcacatctgtggtaacagccccgattgtgacggctac
gaagttgaaagcggcaaattcaagatcaaaggctacgacggcccgatcatcgagtgcgat
aagtgcggctctgagatgcagttgaagtcaggccgctttggcaagtattttggctgtacc
aatagcgaatgtaaaaacacccgtaagctattgaaaagcggcgaagtggcgccgccaaaa
atggacccgatcccgatgccggaactggcttgccaaaaagttgacgaccattacgtgctg
cgtgatggcgcaagcgggctgtttttggctgccagcaagttccctaaaaatcgtgaaaca
cggccgccgctggtgaaagagctgaaagcgcacgccgatgagctgcccgaaaagtatcac
ttcattcttaaagcgccgagtgaagatccggatggtcgcccggcgcaaatccgctactcg
cggaagagcaaagagcagtacgtgatgaccgacgaggagggcaaggccacaggctggaaa
gccatgtttgatgccggtaaatggcacgtggaggacaaacgcaagtga
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