Halomonas profundus: LMS44_14285
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Entry
LMS44_14285 CDS
T08361
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hpro
Halomonas profundus
Brite
KEGG Orthology (KO) [BR:
hpro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpro03019
]
LMS44_14285 (hrpA)
Enzymes [BR:
hpro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LMS44_14285 (hrpA)
Messenger RNA biogenesis [BR:
hpro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LMS44_14285 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
AAA_25
SLFN-g3_helicase
PhoH
SRP54
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UEQ02457
LinkDB
All DBs
Position
complement(3137253..3141287)
Genome browser
AA seq
1344 aa
AA seq
DB search
MEADSIVTTDTSPAPTDSQRLASLKQAAGDVMLRDAERLERRLAGLNRRLRDSKPISRGL
DEVQRELGRAQQQLSQRESQKVAFNYPPELPVVERREDIVNAIRDHQVVVVAGETGSGKT
TQLPKMCLELGRGRRGLIGHTQPRRLAARSVASRLAEELEVSLGEQVGYQVRFTDQSSPT
TLVKLMTDGILLAETQHDPLLLRYDTIIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVII
TSATIDVERFAKHFGTAKTPAPVVEVTGRTYPVEVHYRPLVRDEDDEEDRTLQEGILHAV
EEIEAVEREKGWLHGPRDVLVFLPGEREIRETADTLRRAELKGTEILPLYARLSNEEQNR
VFAPHRGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYRSKIQRLPVEAVSQASAN
QRKGRCGRIAEGVCIRLYSEEDFLSRPGFTDPEIQRTNLASVILSMLGLKLGDIEAFPFV
DPPDSRFVKDGFRLLFELGAVDDKQRLSPLGRKLARLPIDPRLARMVLAGAEFGSLRDVL
IVVSALAIQDPRDRPTDKRQAADQAHQRWHDPDSDFVALLNLWHGIENAREALSGNQLRR
WCREHYINYLRMREWHDTFRQLRQLLRDMDIDVPAPPPRNEDESEEQARQTRRKTSGKVH
QALLSGLLSNLGTLVENREYLGARNRKFMIHPGSGLAKKSPKWIMAFEMVETSKLFARTV
AKIDPQWIEPQAQHLVKRSYSEPHWEMKRAQVVAFEQVTLFGLPIVARRKVHYGPIAPQE
SRELFIRRALVEGEFHTKGAFFAHNRALIDEVEALEDRARRRDILVDEDTLYDFYDQRIP
AEIVNGKGFEHWRKQAEQQEPQLLHFDIDSLKARDAEDVTQAQYPDHLILAGVAYPVSYH
FDPEAEDDGVTLTVPAAMLPQVPVHALEWLVPGLLREKCIALLKSLPKSIRRQVVPIPDW
VDAALETLVPDQRPLTEALGEFIRRRTSTRVHPDDWRLDVLEPHLIMNIRVVDHAGETLG
QGRDLRALEQRFEAAASAGAQALAEQVSQEPAVAGLPKTPLPASRVTTQAGIRVEAYPAL
VAESRIAKTSGLDASEFKVALFDHPAKADAAHQEGIARLAIAKLPEQVKAIKQLPGVEKC
ALLFAKVGSKQALIDDLLLAVFTQVIAQHPLPRSEGEFSQRLNATQGQLVDEAKALLVRV
EAALKGHLAVSKVLKGKLNFALALVYSDVSAQMQRLVYPGFIRDAGAWLDEYPRYTEAAL
IRLEKAARERGRDQMMMQDVQALEARFDARRESERRGRVEDPELVAFGWWLQELRVSLFA
QQLGTNMVVSVKRLEKRWQEITSV
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atggaagccgactcaatcgtgaccaccgacacatccccagcccccaccgatagtcaacgt
cttgcgtcgctgaaacaggccgcgggcgatgtgatgctgcgcgatgcagagcggctggag
cgccggctggctggtttaaaccgtcgcctacgtgatagcaaaccgattagccgtggcttg
gacgaggtgcagcgcgagcttggtcgtgcccagcagcagctcagtcagcgcgaaagccaa
aaggtcgccttcaattacccgccagaattgccggtggtcgaacgccgggaggatattgtc
aacgccatccgcgatcatcaggtcgtggtggtggcgggggagaccggctcaggcaaaacc
acccagctgcctaaaatgtgtttggaactgggccgaggccgccgtggcttaattggccac
acccaaccgcgtcgcttggctgcccgcagtgtcgccagtcgcctggcggaagagctggaa
gtctctctgggcgagcaggtgggctatcaggtgcgcttcaccgaccagagcagcccgacg
accctggtcaaactgatgaccgacgggattttgctggccgagacccagcatgatccgctg
ctgctgcgttacgacaccatcattattgatgaagcccacgagcgcagcctgaatatcgac
tttctactcggctacctcaaacgtttgctccccaagcggcccgatctaaaagtcatcatt
acctcggcgactatcgacgtggagcgctttgccaaacacttcggcaccgccaagacgcct
gcaccggtggtggaagtaaccgggcgcacctaccccgttgaagtacactaccggccgctg
gtgcgcgatgaggacgatgaagaagaccgcacgctgcaagagggcattctgcacgcggtg
gaagagattgaagccgttgagcgtgaaaaaggctggttgcatggccctcgcgatgtgctg
gtgtttttacctggtgagcgcgaaattcgtgaaaccgccgataccctgcgccgcgccgag
ctgaaaggcactgaaattctgccgctctacgcgaggctctccaacgaagagcagaaccgc
gtgtttgcgccgcaccgtggcaggcgcattgtactcgccaccaacgtcgcggaaacgtcg
ctgaccgtgcctgggattcgctacgtgatcgaccctggcctcgtacgtataagccgctat
agctaccgttccaagatccagcgactgccggtagaagcggttagccaggccagcgccaac
cagcgtaaagggcgctgtgggcggattgccgaaggcgtgtgcattcgcctctacagcgaa
gaggatttcctatcccggcccggctttaccgacccggaaatccagcgcaccaaccttgcc
tcggtgattctctcgatgctggggctcaagctcggcgatatcgaggcctttccgtttgtt
gatccaccggatagccgctttgttaaagacggctttcgactgctgttcgagctgggggcg
gtggacgacaagcagcgcctttctccgcttgggcgtaagctggcgcggctgccgattgac
ccgcgcttggcgcgaatggtgttggcgggtgccgaattcggcagccttcgcgatgtgctg
atcgtcgtctcggcgctagccatccaagacccccgcgaccgaccgacggataagcgccag
gcggccgaccaagctcaccagcgctggcatgatccggattccgattttgtcgccttgctg
aacctttggcacggcattgagaatgcccgtgaggcgctttcaggtaatcagctgcgccgc
tggtgccgcgagcactacatcaactacctgcgcatgcgcgaatggcacgacaccttccgc
caactgcgccaactgctgcgcgatatggatatcgacgtgcccgcgccgccgccccgtaat
gaagacgagagcgaagaacaggcgcgtcaaacgcggcgtaaaacgtcgggcaaggtgcat
caggcgctactctcggggctgctctctaatctggggacgttggtggagaaccgcgagtat
ctcggcgcccgcaatcgcaagtttatgattcatccaggctcagggttggccaagaagtcg
cccaagtggatcatggcgttcgagatggtggaaacctccaagctgtttgcccgcaccgtg
gccaaaatcgatccccagtggattgaaccccaggcgcagcacctggttaaacgcagctac
agcgaaccgcattgggaaatgaagcgcgcccaggtagtggcctttgaacaggtcacgctg
tttggtctgccgattgtggcgcggcgcaaggtacattacgggccaatcgcgccccaggag
tcccgggagctgtttattcgccgtgcgctggtggaaggggaatttcacaccaaaggtgcc
ttctttgctcataaccgcgcgttgatcgacgaagtcgaagcgctggaagatcgcgctcgg
cggcgagatattctggtcgatgaagacacgctctatgacttttacgaccagcggatcccg
gcggagatagtcaacggcaagggctttgagcactggcgcaagcaggccgagcagcaagag
ccacaattactgcatttcgatattgattcacttaaagcgcgcgacgcggaggacgttacc
caggcgcagtatcctgatcatttgattctggcgggcgtcgcgtatccggtaagctaccac
tttgaccccgaagccgaggatgacggtgttaccctgaccgttcccgctgcaatgttgccc
caggtgccggtgcatgctctggagtggttggtacctgggctgctgcgtgaaaagtgtatt
gcgcttctgaagtcactgccgaaaagcatccgccgccaggtggtgccgattcctgattgg
gtggatgcggcgctggaaaccctggtgcccgatcagcgcccgttaaccgaggccttgggg
gagttcattcgccgccgtacatcgacgcgggtgcatcccgacgactggcgcctcgacgtg
ctcgaaccgcatctgatcatgaatattcgcgtggtcgatcacgcgggcgaaaccttaggg
caggggcgcgatctgcgtgctttagagcagcgctttgaagcggcagccagcgcaggcgcc
caggcactggctgaacaggttagccaagagcccgctgtggccgggctacccaagacgccg
ctgcccgcttcgcgcgttaccacccaggcaggtattcgcgtagaggcgtatcctgccctg
gtcgctgaaagcaggattgcgaaaaccagcggtcttgacgccagcgagttcaaggtggcg
ttgtttgatcaccctgcaaaagctgacgctgcccaccaggagggcatcgctcggctggca
attgccaagctacctgaacaggttaaagcgattaaacaactgccgggtgttgagaagtgc
gcgctactgttcgccaaagtgggtagtaaacaagctttgatcgacgatctgctgcttgcg
gtgtttacccaggtgattgctcagcaccccctgccgcgctcggaaggcgagtttagccag
cgactaaacgctactcagggtcagcttgtagacgaagcgaaagcactgctggtacgcgta
gaggccgcgctaaaagggcatctggcggtcagtaaggtgctcaaagggaagcttaatttt
gctctggcgctggtgtatagcgatgttagcgcgcagatgcagcgtctggtctatccaggc
tttattcgcgatgcgggcgcttggctggacgaatacccgcgctacaccgaggcggcgctc
attcggcttgaaaaagccgcccgtgagcgcggtcgcgatcaaatgatgatgcaagatgtc
caggcattagaggcccgctttgatgcccgccgcgaaagcgagcgacgcggaagggtggaa
gatcctgaattggtcgcttttggctggtggctgcaggagcttagagtatcgctatttgca
cagcagttggggactaacatggtggtgtcggtaaaacgattggaaaaacgctggcaagag
atcactagcgtttag
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integrated database retrieval system
