Halomonas profundus: LMS44_23410
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Entry
LMS44_23410 CDS
T08361
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hpro
Halomonas profundus
Pathway
hpro03420
Nucleotide excision repair
hpro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LMS44_23410 (uvrD)
03430 Mismatch repair
LMS44_23410 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpro03400
]
LMS44_23410 (uvrD)
Enzymes [BR:
hpro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMS44_23410 (uvrD)
DNA repair and recombination proteins [BR:
hpro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LMS44_23410 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
LMS44_23410 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
T2SSE
Motif
Other DBs
NCBI-ProteinID:
UEQ04183
LinkDB
All DBs
Position
5144600..5146798
Genome browser
AA seq
732 aa
AA seq
DB search
MDDVTAILDQLNSAQREAVSAPQGNLLVLAGAGSGKTRVLVHRIAWLMQAEGLSPYALLA
VTFTNKAAKEMRTRLEALLSISMRHVWVGTFHSIAHRLLRTHWQDAKLPQHFQIIDSDDQ
LRLVKRLLKDYSIDDERFPPRQVQHFISGCKEEGLRPHQVNVDGDAYMGQMVELYERYQL
TCERGGLVDFGELLLRSLELLRDNPALLNHYQERFGHVLVDEFQDTNTLQYAWLKLLTGM
KTPMTAVGDDDQSIYGWRGAKVENISRFEQEFPQTHTVRLEQNYRSTSAILEAANTLISH
NSERMGKNLWTDGIEGEPISIYAGFNDLEEARYIVDTIKEKVDEGFNRRDIAILYRSNAQ
SRLLEETLIRQGMPYRIYGGHRFYERLEIKNALAYLRLMLNRDDDASLERVINVPTRGIG
TRTVEIVRLRAREQSIPLWQALHDAINDGTLKGRAANAVQTFANLIEQLDNDASGMALHE
IIDHVTIHTGLIEHHKSERGEKGQARVENLEELVNAARAFTQGDVFEAPEAGEGMAALEA
FLSEAALNAGDHEAEEFEDSVQLMTLHSAKGLEFPVVFIAGVEEGLFPHKMSLEEPGRLE
EERRLCYVGVTRAMQKLYLTHAETRRLHGKEVFPRPSRFLRELPPHLLEEVRLRGHISRP
VTASRTSFAQQSIASDGDIPSLHVGQGVEHPVFGEGIILNAEGEGARARVQVSFEGEGVK
WLVLGFAKLTPL
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgtcacggcgattctcgatcagctcaactccgcccagcgcgaagcagtgagc
gcccctcaaggtaatctgttggtgctcgcaggcgcaggctccggtaaaacccgcgtgctg
gtgcatcgcatcgcctggctgatgcaggccgaagggctgtccccttatgccctgctggca
gtgacctttaccaataaagccgccaaagagatgcgcacccgccttgaggcactgctgagc
atctcgatgcgccatgtgtgggtaggcacctttcactccatcgcccaccgcctgctgcgc
acccattggcaggacgccaagctgccgcaacactttcagattatcgattctgacgatcag
ctacgcctggtcaaacggctgttgaaagattactccatcgacgacgaacgcttcccaccc
cgccaagtgcagcactttatctccggctgcaaagaggagggactgcgcccacaccaagtc
aatgtggatggcgatgcctacatgggccagatggtcgagctctacgagcgctaccaactt
acctgcgagcgcggcggcctggtcgatttcggtgaactgctgctgcgaagcctggagcta
ctacgcgacaacccggcgctgttaaaccactaccaggagcgctttggtcatgtactggta
gatgagttccaagataccaataccctgcaatacgcttggctaaaactgctcaccggcatg
aagacgccgatgacggcggtgggtgatgacgaccagtcgatctacggctggcgcggtgcc
aaggtggagaatatcagccgctttgagcaagagtttccgcaaacccacaccgtacggctt
gaacagaactatcgctccaccagcgccatcctggaagccgccaatacgctgatcagccac
aacagcgagcggatgggtaaaaacctctggactgacggcatcgaaggcgagccgatctca
atttacgctgggtttaacgacctggaagaagcccgctatatcgtcgataccatcaaggag
aaggtcgacgaaggctttaaccgccgcgatatcgcgattctctaccgctcaaatgctcag
tcgcggctgctggaagagacgctgattcgccaaggcatgccctaccgtatttacggcggc
caccgcttctacgagcgcctggaaatcaagaatgccctggcctaccttcgcctgatgctc
aaccgcgacgacgatgcctcgctggagcgggtgattaacgtacccacccgcggcatcggc
acacgcacggtggaaattgtccgcctgcgcgctcgggaacaaagtatccctctctggcaa
gcgctccacgatgcgattaacgacggcaccttgaaaggccgcgcggccaatgccgtgcaa
accttcgccaacctgatcgagcagctcgataacgatgcctctggcatggcgctgcatgaa
attatcgatcacgtcacgatacacacgggcctgatagagcatcacaaaagtgagcgcggc
gagaaaggccaagcgcgggtcgagaacctggaagagctggtcaacgctgcccgtgccttt
acccaaggcgatgtctttgaagcacctgaagcgggcgaaggcatggcggcgctggaagcg
tttctctcagaggccgctctcaatgcaggcgaccatgaagccgaagagtttgaggacagc
gtacagctgatgacgctgcactccgccaaaggcctggagtttcccgtcgtctttattgcc
ggtgtcgaggagggtctgtttccgcacaagatgtccctggaagagccgggtaggctcgaa
gaggagcgccggctctgttacgtcggcgtcacccgcgctatgcagaagctctacctcaca
cacgccgaaacccgccgcctgcacggcaaagaagtgtttccacgcccgtcgcgttttttg
cgagaactaccgccgcacctactcgaagaagtccgtctgcgcgggcatatttcccgccca
gttaccgcgtcacgtacttcctttgcccagcaaagcatcgcaagcgacggcgacataccc
agcctgcacgttggccaaggggttgagcacccggtgttcggcgaagggattattcttaac
gcggaaggcgaaggtgcccgcgcccgggtacaggtcagctttgaaggcgaaggggtcaaa
tggctagtgcttggttttgctaagctaacgccgctttaa
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