Helicobacter pylori Shi470: HPSH_01800
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Entry
HPSH_01800 CDS
T00742
Name
(GenBank) single-stranded-DNA specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hps
Helicobacter pylori Shi470
Pathway
hps03410
Base excision repair
hps03430
Mismatch repair
hps03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HPSH_01800
03430 Mismatch repair
HPSH_01800
03440 Homologous recombination
HPSH_01800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hps03400
]
HPSH_01800
DNA repair and recombination proteins [BR:
hps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HPSH_01800
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HPSH_01800
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPSH_01800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
GLUCM-like_C
Fe-S_biosyn
Motif
Other DBs
NCBI-ProteinID:
ACD47810
LinkDB
All DBs
Position
complement(337583..339133)
Genome browser
AA seq
516 aa
AA seq
DB search
MKQKLKAQIKERVASIAYNEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGV
ISSTIMAKFFESLNYKHVRIVIPNRFIDGYGISKKFLEKHHAPLIITVDNGISAFEATRF
CKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFSIAPLINSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVF
EEALKHAMVGEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSGRSSSN
IDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLTLT
LKDIDRELLEIIEMGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDRECIKEAIY
FNTERFLKAGEKVNAIFSVELDECSNEPKMFVKSLL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaagcttaaagctcaaatcaaagagcgagtggcttctatcgcttataatgaa
aaagggtttcctagcccctttttatttaaagacttgaaaaaagccgcgctcaaaatcata
gaagccatgcgcgcaaacacagagattttagtggtgggcgattatgacgctgacggcgtg
attagctctactatcatggcaaaattctttgaaagcctgaactataagcatgttcgcatt
gtaatccctaatcgcttcattgatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataacgggattagcgcctttgaagccacgcgattt
tgtaaagaaaaaaattacacccttatcatcacagatcaccattgcttacaccatgatgaa
gtcccagacgcttatgcggtgatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgcggggcgttggtggcgttttatttgtgctatggcatccaccagcttttagga
aaagaaaaaagccattctagcgagttgttgtgtttggcgggcgtggcgactattgctgac
atgatgcctttgactttttttaaccgctttttagtttctaaagccttgtattttttgcaa
aaagaatccttaggagcgatggggtttttgcgccaaagagaagtttttagaaaacgctct
ttaaaagcgagcgatatttcttttagtatcgcccccttaatcaactccgcagggcgcatg
caagatgcgaaaatggctttagattttttaagcgcgaataattttcaagatggctatttt
ttgtatgaacgcttgaaagcatgcaatatgaagcgtaaaatgatccaacagcaggttttt
gaagaggctcttaagcatgcgatggttggcgaaaaaattatcgtcgcttttaaggatgat
tggcatgagggtgtgcttgggattgtggcttcaaaattagtggaagccactcaaaagcca
agcctggtttttacctttaaagaaggggtgtataaagggagcgggcgcagctcttcaaat
attgatctcattgacgctttgaatggggtttcttctttgttgctcggctatggggggcat
aggcaagcttgcggtttgagcgttggaaaaaacaatatcatctcgctctttgaaacttta
gaaaattttgattttaaaatcctacctttttgtgaaaaagaaccccctttaacgctcaca
ttaaaagacattgatagagagcttttagagattatagaaatgggcgaaccttatgggcaa
gaaaacccagagccgctctttcaagcgcaaaatttagaagtcatagaagaaaaaatcatt
aaagaaagccaccaggttttgcgttttaaggatagagaatgcatcaaagaggctatttat
tttaacactgagcggtttttgaaagcgggcgaaaaggtgaatgcgatttttagcgtggaa
ttagatgagtgttctaatgagcctaaaatgtttgttaaaagtttgttgtag
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