Helicobacter pylori Shi470: HPSH_03295
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Entry
HPSH_03295 CDS
T00742
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
hps
Helicobacter pylori Shi470
Pathway
hps02020
Two-component system
hps02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hps00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HPSH_03295
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPSH_03295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hps03021
]
HPSH_03295
Transcription machinery [BR:
hps03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPSH_03295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
ACD48098
LinkDB
All DBs
Position
622709..623953
Genome browser
AA seq
414 aa
AA seq
DB search
MAVLRANLSPKNKLNATLKGWLPILQSELEDLEEVLKQNALDNPLIKIENKRIKNFSDRF
SAKNSSDHLENFAIASKSLFETLEAQIIPPLFPTETSQKIAMDIINGLDSEGYFEENIEE
RAKILGVESEVYEKVRQRFSYLNPAGIGARDVKESFLFQLEGRELDNNELYEEARKIILN
LEKHHEFSKDFYYEKALKILRSFKNPPAIEFLEKEIEVIPELFILEVDGEIIVRLNDESY
PTISLEENRFKDSAYLKEKLKEAKDLIDALSLRKATIYKIGLMLLEYQYDFFKGKELRPL
KLLDLANEFNHSVSTISRAISNKYLACQRGVFPIKHFFSTALDNSETSNAVIKDYLLELI
KNEDKKEPLSDAKILELIEEKFHLKMVRRTITKYRQLLNIASSSERKKLYLMRA
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggcggttttacgcgcaaaccttagccctaaaaacaaattaaacgctaccttaaaaggg
tggcttcccattttacaaagcgagcttgaagatttagaagaagtgttgaaacaaaacgcc
ctagataaccccttaatcaaaattgaaaacaagcgcatcaaaaattttagcgatcgtttt
agcgctaaaaatagcagcgatcatttagaaaatttcgcaatcgcttctaaaagccttttt
gaaaccttagaagctcaaatcatcccccccctctttcccactgaaacctctcaaaaaatc
gctatggatattatcaatgggctagatagtgaagggtattttgaagaaaacattgaagaa
agggctaaaattttaggggtagagagcgaagtttatgaaaaagtgcgccagcgttttagt
taccttaatcccgctggcattggtgctagagatgtgaaagagagctttttattccagcta
gagggtagggaattagacaataatgagctttatgaagaagcgcgaaaaatcattttaaat
ttagaaaaacaccatgaattttctaaagatttttattatgaaaaggctttaaagatttta
agatcctttaaaaaccccccagccattgagtttttagaaaaagaaatagaagtcattccg
gagctttttattctagaagtggatggtgaaatcatcgtgcgtttgaatgatgagagctac
ccaacgatcagtttagaagaaaatcgctttaaagatagcgcttatttaaaagaaaaatta
aaagaggctaaggatttgattgatgcgttgagtttgagaaaagccacgatttataaaatc
ggcctcatgcttttagagtatcaatacgatttttttaagggtaaggaattgcgcccttta
aaattgttggatttagccaatgagtttaaccactctgtaagcacgatttcaagggccatt
tctaataaatatttggcatgccaaaggggggttttccctattaaacatttctttagcacc
gccttagacaatagcgagacttcaaacgctgtgattaaagactaccttttagaattgatc
aaaaacgaagacaaaaaagagcctttgagcgacgctaagattttagaactcattgaagaa
aaattccatttgaaaatggtaagaagaacgatcaccaaataccgccaactgctcaacatc
gcttcttcaagcgaaaggaaaaagctctatttgatgcgcgcttga
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