KEGG   Helicobacter pylori Shi470: HPSH_04305
Entry
HPSH_04305        CDS       T00742                                 
Name
(GenBank) cag pathogenicity island protein (cag beta, cag5)
  KO
K12090  cag pathogenicity island protein 5
Organism
hps  Helicobacter pylori Shi470
Pathway
hps05120  Epithelial cell signaling in Helicobacter pylori infection
Module
hps_M00564  Helicobacter pylori pathogenicity signature, cagA pathogenicity island
Brite
KEGG Orthology (KO) [BR:hps00001]
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05120 Epithelial cell signaling in Helicobacter pylori infection
    HPSH_04305
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:hps02044]
    HPSH_04305
Secretion system [BR:hps02044]
 Type IV secretion system
  Cag pathogenicity island (PAI) protein
   HPSH_04305
SSDB
Motif
Pfam: T4SS-DNA_transf TraG-D_C TrwB_AAD_bind RIC3
Other DBs
NCBI-ProteinID: ACD48296
LinkDB
Position
839971..842217
AA seq 748 aa
MEDFLYNTLYFIEDYKLVVIFSFIGLIALFFLYKFIKAQKKAFKDKANQPQKKKNFKEII
IEGLKERVKTFGFWLQAILLLSYSFITSGLFFLILLGNFYDDNKLPESDDDLFDIWIYAI
QDFPAYYFKALCFSSLKIYGFNISLVVYSSILCSYIFITFFVWFLKYLTRTRDIGANKKV
DDLFGSASWESEEKMIKAKLITPNNKKRAFDKREVIVGRRGLGDFIAYAGQAFIGLIAPT
RSGKGVGFIMPNMINYPQNIVVFDPKADTMETCGKIREKRFNQKVYIYEPFSLKTHRFNP
FAYVDFGNDVVLTEDILSQIDTRLKGHGMVASGGDFSTQIFGLAKLVFPERPNEKDPFFS
NQARNLFVINCNIYRDLMWTKKGLEFVKRKKIIMPETPTMFFIGSMASGINLIDENTNME
KVVSLMEFFGGEEDKSGDNLRVLSPATRNMWNNFKTMGGAKETYSSVQGVYTSAFAPYNN
AMIRNFTSANDFDFRRLRIDEVSIGVIANPKESTIVGPILELFFNVMIYSNLILPIHDPQ
CKRSCLMLMDEFTLCGYLETFVKAVGIMAEYNMRPAFVFQSKAQLENDPPLGYGRNGAKT
ILDNLSLNMYYGINNDNYYEHFEKLSKVLGKYTRQDVSRSIDDNTGKTNTSISNKERFLM
TPDELMTMGDELIILENTLKPIKCHKALYYDDPFFTDELIKVSPSLSKKYKLGKVPNQAT
FYDDLQAAKTRGELSYDKSLVPVGSSEL
NT seq 2247 nt   +upstreamnt  +downstreamnt
atggaagactttttatataacaccttatatttcatagaggattataagttggttgttatt
tttagtttcatagggttaatagcgttattttttctctacaaattcataaaagctcaaaaa
aaggcttttaaagataaagctaaccaacctcaaaagaaaaaaaactttaaagaaatcatt
atagaggggctgaaagaaagagttaaaacctttggcttttggttacaagctatactatta
ctatcctattcttttatcacatcagggttatttttcttgattctcttaggtaatttttat
gatgacaataaattgcctgagagtgatgatgatctttttgatatatggatctatgcgata
caagattttcctgcatactattttaaggcgctttgttttagttcactcaagatttatggg
ttcaatatatccttagtcgtatatagttctattttatgctcttatatattcattaccttt
tttgtgtggttcttaaaatacttaactcggactagagacataggagcgaataaaaaagtt
gatgatctctttggtagcgcgagttgggagagcgaagaaaaaatgatcaaagctaaactt
atcacacccaataataaaaaacgcgcctttgacaaacgagaggttattgtaggcaggcgt
ggtttaggggattttatcgcttatgcaggacaggcgttcattggcttgatcgctcccact
agaagcggtaagggtgtgggtttcatcatgcccaatatgatcaattatcctcaaaatatc
gttgtgtttgaccctaaggctgacactatggaaacttgcggaaaaatcagagaaaaacgc
ttcaaccaaaaagtgtatatctatgaacctttctccttaaaaacacaccgatttaatcct
ttcgcttatgtggattttggtaacgatgtggttttgactgaagacatactctctcaaatt
gacacacgcctaaaaggtcatgggatggtggctagtgggggggatttttccactcaaatc
tttggattggctaagttggtgttccctgaaagacctaatgaaaaagatcctttttttagc
aatcaggcgcgaaatctttttgtcattaattgcaatatttatagggatctcatgtggact
aaaaaggggcttgaatttgtcaaaagaaaaaaaatcatcatgcctgaaacccccacgatg
tttttcataggttctatggcgagcggtatcaatttgattgatgaaaacacaaacatggaa
aaagttgtgtctctgatggaattttttggaggtgaagaagataagagtggcgacaatcta
agagtgcttagtcctgctactagaaacatgtggaacaatttcaaaacaatgggtggtgct
aaagaaacttacagctctgttcaaggggtctatacctcagcgtttgcgccttacaataat
gctatgattaggaatttcacgagcgctaatgattttgatttcaggcgtttgaggattgat
gaagtgagtattggcgtgatcgctaaccctaaagaaagcactattgttgggccgatatta
gagctgtttttcaatgtgatgatttatagcaaccttattctgccaatccatgatccacaa
tgcaaaagaagttgtttgatgcttatggatgagttcacgctctgtggctatttagaaacc
tttgtgaaagcggtagggattatggcagaatacaacatgcgccctgcctttgtgtttcaa
agtaaggcgcaactagagaatgaccccccacttggttatggtaggaatggcgctaagact
attttagacaacctttctttaaatatgtattatgggattaacaacgataactactatgaa
cattttgaaaaactttctaaggtgttggggaaatacacaaggcaagacgtgagtcgaagc
attgatgataatacaggtaagaccaacacttctatcagcaacaaagagcggtttttgatg
acccctgatgaattgatgaccatgggcgatgagcttatcattttagaaaacacgctcaaa
cccatcaaatgccacaaggcactctactatgatgatccgttcttcaccgatgaactcatc
aaagtgagtccaagcttgagcaagaaatacaaattggggaaagtgcctaatcaagcaact
ttctatgatgatttgcaagccgctaaaactagaggcgaattgagctatgacaagtcttta
gtgcctgtgggttcaagcgaactgtga

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