Helicobacter pylori Shi470: HPSH_04610
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Entry
HPSH_04610 CDS
T00742
Name
(GenBank) topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hps
Helicobacter pylori Shi470
Brite
KEGG Orthology (KO) [BR:
hps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hps03032
]
HPSH_04610
03400 DNA repair and recombination proteins [BR:
hps03400
]
HPSH_04610
Enzymes [BR:
hps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HPSH_04610
DNA replication proteins [BR:
hps03032
]
Prokaryotic type
DNA Topoisomerases
HPSH_04610
DNA repair and recombination proteins [BR:
hps03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HPSH_04610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Terpene_syn_C_2
SpecificRecomb
ACDC
Motif
Other DBs
NCBI-ProteinID:
ACD48357
LinkDB
All DBs
Position
complement(906132..908066)
Genome browser
AA seq
644 aa
AA seq
DB search
MYKNCVFIIESPNKIAKIKELTGSSFVFATGGHFVELVNIEVSKEFNPIFEIKKSTDKKK
DKSTHINYMINQCKDKVVYIATDPDREGYGIGYKFYEKIKNIAKTIYRTEFHEITKSGVE
KGLNNAVLFSQSNLNLYYSWLGRIVSDQFVGFTLTPYLRKNIKNFEVSAGRVQTTALSIL
VELDRKIQAFEQKNIDEKLSYSIEAIIDVLGSQISITLVEENKRKVFETKELAQNFLNDL
KNNLNPLAFLDAVEQKDKEKSPPKPFTTSNLLKDGVRILEMGVKQIQEHAQKLFEAGLIT
YIRTDSEALSKEYLQEHQAFFENIYPSVYEYREYRAGKNSQAEAHEAIRITHPHCYEDLK
KVCEKHNITDINDLKVYTLIFFNTICSQSKNAIYENTTLNFKVKTHSFKCSFSKLKSKGF
KAIKDLEEEKKDEEEIESDLDFSSLQLKTQMPILDFNIKELKTKAPSPYTESTFIAMMET
YGIGRPSTYTSVFEILKNKNYITLEGKNRKITPTALGKSIVDFFLNDNQTQWIAISKVDN
SFTKKLEEMLDMIIKDGKSAYLDLMQNIQKKLGTEISNLYRNNSNNNISATKKEMIPPTE
KQLNFVETIEKTLQIKASDMTKKDKFACMKFIEEHSKKMPKKDN
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtataaaaactgcgtatttatcatagaaagtcccaataagatcgctaaaatcaaagaa
ttaacaggaagttcatttgtttttgcgactggtgggcattttgttgagctagtcaatatt
gaagtgagtaaagaatttaatcctatttttgaaatcaaaaaaagcacggataagaaaaag
gataaatccactcatatcaactatatgataaatcaatgtaaagataaagtggtctatatt
gctactgaccctgatagagagggttatggtataggttataaattttatgaaaaaatcaaa
aatatagctaaaacaatttatcgcactgaatttcatgaaatcacaaaaagcggtgtagaa
aaaggcttgaacaatgctgtgctattttctcaaagcaatctcaatctatattatagttgg
ctaggtaggattgtaagcgatcaatttgtaggctttactttaacgccttatttgcgcaaa
aacattaaaaattttgaagtgagtgctggtagggttcaaactactgctctttccatttta
gtagaattagacagaaaaatccaagcctttgaacaaaagaatattgatgagaaattaagt
tatagcatagaagctattattgatgtgttaggttctcaaatctctattactttagtagaa
gagaataaaaggaaagtgtttgagaccaaagaattagcccaaaactttttaaatgactta
aaaaacaatcttaaccccttagcttttttagacgcagtagagcaaaaagataaagaaaaa
tctccacctaaacctttcaccacttctaatcttttaaaagatggggttagaattttagaa
atgggcgttaagcaaatccaagaacacgcccaaaaactttttgaagctggattgattact
tatattcgcaccgatagtgaagcgttaagtaaagaatacttgcaagagcatcaagcgttt
tttgaaaatatttatcctagcgtgtatgagtacagagaatatagggctggtaaaaattca
caagctgaagcgcatgaggctataagaattacacaccctcactgctatgaagatcttaaa
aaagtgtgcgagaaacacaatattacagatattaatgatttaaaagtctatacgcttatc
ttttttaacaccatttgctctcaaagtaaaaacgctatttacgaaaacacaactttaaat
tttaaagtaaaaacgcacagctttaaatgcagttttagcaaactcaaatctaaaggcttt
aaagcgattaaagacttagaagaagaaaagaaagatgaagaagagattgaaagcgatctt
gatttttctagcttgcaattaaaaactcaaatgcctattttagattttaatatcaaagaa
ctaaaaactaaagctcctagcccttatactgaaagcacttttatcgcaatgatggaaacc
tatggcataggaagacctagcacttatacaagtgtatttgagatcttaaaaaacaaaaat
tacattacattagagggcaaaaataggaagatcacgcccacagctcttggtaaaagcatt
gttgatttctttttgaatgataaccaaacacaatggattgctatttctaaagtggataat
agttttacaaaaaaattagaagaaatgttagatatgattataaaagatggtaaaagtgct
tatcttgatttaatgcaaaatatccaaaagaaattaggcacagaaatttctaacttatat
agaaataatagcaataacaacatttctgctacaaaaaaagaaatgatacctccaactgaa
aaacaacttaattttgtagaaactatagaaaaaactcttcaaataaaagcttctgatatg
acgaaaaaagacaagtttgcgtgcatgaagtttatagaagaacatagtaaaaaaatgccc
aaaaaggataattga
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