KEGG   Helicobacter pylori Shi470: HPSH_04795
Entry
HPSH_04795        CDS       T00742                                 
Name
(GenBank) rep helicase, single-stranded DNA-dependent ATPase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
hps  Helicobacter pylori Shi470
Pathway
hps03420  Nucleotide excision repair
hps03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hps00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HPSH_04795
   03430 Mismatch repair
    HPSH_04795
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hps03400]
    HPSH_04795
Enzymes [BR:hps01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HPSH_04795
DNA repair and recombination proteins [BR:hps03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HPSH_04795
   MMR (mismatch excision repair)
    Other MMR factors
     HPSH_04795
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_12 AAA_11 Viral_helicase1 AAA_30 DEAD
Other DBs
NCBI-ProteinID: ACD48393
LinkDB
Position
944730..946760
AA seq 676 aa
MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN
KASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN
ALTDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSNKNPEHTPYAAFYENILDEFENTK
KKHNYIDYNDLLLLFKQAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYD
QSIYAFNGADISIISNFTQKYKNAQVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEV
VKSGHFNKPALLNYNDNIAQCQDIAKRIVMRKDFKEVAVIFRNNASADQLEAALRSHNVP
SKRKGSASFFESKEVALALDICALIFNPKDIMAAIHVLSHISDIGSNTAKDIHEALMLLG
NGDLKLALTHPNKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPK
ISLNGAKMLSDFFILYTKAPTHSPSALIKHILESVFFQTFKTRLLKERSKNKDGSYNEFK
KLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKD
VYIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHK
PSVFLYEAGLLKPDLK
NT seq 2031 nt   +upstreamnt  +downstreamnt
ttgttagaaactttgcaattaaaccctgagcaattaaaagcggccaaggctttgaaaggg
tataatttagtgattgcgagcgctggcacaggaaagacttctacgattgtggggcgcatt
ttatacctgcttgataacggcatcaagcctgaagaaatcttgcttttgactttcaccaat
aaagcgagtaatgaaatgatcgctagggtggctaaatattccaagttaagctccaaaatt
gaagcgggcactttccatgcggtggcgtatcgctatttaaaagagcattaccccaattta
agcctaaagcaacctaaagaattgaaaaaacttttagaaagcattgtggatactaaaaac
gcgctaacagatgacgataaaaagccctacacttcgcagcatctctacgccctctattct
ctttataccaacgctctaaaacaagaagattttagtgcatggctttctaataaaaaccct
gaacacacgccatacgccgccttttatgaaaacattttagacgaatttgaaaacactaaa
aaaaagcataattatattgactataacgacttactgctgttgtttaaacaagcgatgcta
gaaagacctagcccttataaagaagtgctttgcgatgagtttcaagacactaacccctta
caagaatccattttagacgctatcaaccctcccagtttgttttgcgtgggcgattacgat
cagagcatttacgcttttaatggggcggatatttctatcatttctaatttcactcaaaaa
tacaaaaacgcccaggttttcacgctcaccaaaaactaccgctcttctaaagagatttta
gatctcgctaatcaagtgatacaacacaacgagcgcatttaccctaaaaatttagaagtg
gtgaaatcagggcatttcaataagcccgcgcttttaaattacaacgacaatatcgcgcaa
tgccaagacatcgctaaacgcattgtcatgcgaaaggattttaaagaagtggcagtgatt
tttaggaataacgcgagcgcggatcaattagaagccgctttaagatcccacaatgtgcca
agcaaaagaaaagggagcgcaagcttctttgaatccaaagaagtggcgttagcgttagac
atttgcgcgctcatctttaaccctaaagacattatggcagcaatccatgttttaagccat
atcagcgatattggctctaacaccgctaaagacattcatgaggccttaatgcttttaggc
aatggcgatctcaaattagccctaacccaccctaataaagaagccaaaatttacaccaag
aaaaaagaaatcacctctatggggctttttgaagaaatttttgccctagaaaacagctca
aggtttaatagcgtgatagataaagcgtttcattcgcacccggtgttgatgcaccctaaa
atctcactcaatggggctaaaatgcttagcgattttttcattctttataccaaagcccct
acccattcccctagcgctttaatcaaacacatcctagaaagcgtgttttttcaaaccttt
aaaacacgccttttaaaagagcgatccaagaataaggacggctcttataacgaatttaaa
aaactccaagcgcaaaaacgcttcaatgaaaaaatggatttgctgagttctttggcgaaa
aattaccagaatttagggcgttttttaaacggcactttaataggctctagtgaagccacg
caaggcgagggcgtgaatttattgagcgtgcatgcttctaaaggcttggaatttaaagat
gtttatattatcgatttaatggagggccgtttccctaaccacaagctcatgaataccggt
gggggcattgaagaagagcggcggcttttttatgtcgctatcacaagggctaaggaaaat
ttatggctttcttatgcgaaaaacgaattgagagaaaacgccaaacctaaagagcataag
ccctcggtgtttttgtatgaagcggggcttttgaaacccgatttaaaataa

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