Helicobacter pylori Shi470: HPSH_04805
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Entry
HPSH_04805 CDS
T00742
Name
(GenBank) outer membrane protein HopC
KO
K15843
outer membrane protein HopC/AlpA
Organism
hps
Helicobacter pylori Shi470
Pathway
hps05120
Epithelial cell signaling in Helicobacter pylori infection
Brite
KEGG Orthology (KO) [BR:
hps00001
]
09160 Human Diseases
09171 Infectious disease: bacterial
05120 Epithelial cell signaling in Helicobacter pylori infection
HPSH_04805
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HP_OMP
Motif
Other DBs
NCBI-ProteinID:
ACD48395
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All DBs
Position
947287..948855
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AA seq
522 aa
AA seq
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MIRKIMIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGTKRDELARE
LNADVTNNILNNNTGGNVAGALSNAFSQYLYSLLGAYPKKLNGNDVSANALLGGTVGRGT
CAAAGTAGSNSLNTQSACTAAGYYWLPSLSDRVLSTIGSQTNYGTNTNFPNMQQQLTYLN
AANVFFNAMNKALEKNGTSGTSGTSGATGQNGQTYSTQAIQYLQSQQNILNNAANLLKQD
ELLLEAFNSAVAANIGNKEFNSAVFTGLVQGIIDQSQKVYNELNTNPISGSTVNSTGIDS
NQANAVQGRANQLSNALYNAQVTLDKINALNNQVRSMPYLPQFRAGNSRATNIMNGFYTK
VGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNR
SVDMGFFSGIQLAGETVQSTLRDDPNVKLHGKVNNTHFQFLFDFGMRMNFGKLDGKSNRH
NQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
ttgataaggaaaatcatgataaagaaaaatagaacgctgtttcttagtctagccctttgc
gctagcataagttatgccgaagatgatggagggtttttcaccgtcggttatcagctcggg
caagtcatgcaagatgtccaaaacccaggcggcactaaaagagacgaactcgcaagagag
cttaacgctgatgtaacgaacaacattttaaacaacaacaccggaggcaatgtcgcaggg
gcgttgagtaacgctttctcccaatacctttattcgcttttaggggcgtatccaaagaaa
ctcaatggtaacgatgtgtctgcgaacgctcttttagggggtacggtaggccgtgggact
tgcgcggctgcagggacggctggtagcaattctcttaacactcaaagcgcttgcaccgct
gcgggctattattggctccctagcctttctgatagggttttaagcacgatcggcagccag
actaactatggcacgaacaccaatttccccaacatgcaacaacagctcacctacttgaat
gcggcgaatgtgttttttaatgcgatgaataaggctttagagaaaaatggaactagtgga
actagtggaactagtggtgcgactggtcaaaatggtcaaacttactctacacaagctatt
caataccttcaaagccaacaaaatattctcaataacgcagctaatttgctcaagcaagat
gaattgcttttagaagctttcaactctgccgtagctgctaacattgggaataaggaattc
aattcagccgtttttacaggtttggtgcaaggcattattgatcaatctcaaaaagtttat
aacgaactcaatacaaaccccattagcgggagcacggttaatagcactgggatagatagc
aaccaagctaacgctgtgcaagggcgcgctaatcagctctctaacgctctttataacgcg
caagtaactttggataaaatcaatgcgctcaacaatcaggttaggagcatgccttacttg
ccccaattcagggccgggaacagccgtgcgacgaatatcatgaacgggttttacactaaa
gtgggctataagcaattcttcgggaagaaaaggaatatcggtttgcgctattatggtttc
ttttcttataacggagcgagcgtgggctttagatccactcaaaataatgtagggttatac
acttatggggtggggactgatgtgttgtataacatctttagccgctcctatcaaaaccgc
tctgtggatatgggcttttttagcggtatccaattagccggtgagaccgtccaatccacg
ctcagagatgaccccaatgtgaaattgcatgggaaagtcaataacacgcacttccagttc
ctctttgacttcggtatgcggatgaacttcggtaagttggacgggaaatccaaccgccac
aaccagcacacggtggaatttggcgtagtggtgcctacgatttataacacttattacaaa
tcagcagggactaccgtgaagtatttccgtccttatagcgtttattggtcttatgggtat
tcattctaa
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