Helicobacter pylori Shi470: HPSH_07575
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Entry
HPSH_07575 CDS
T00742
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hps
Helicobacter pylori Shi470
Pathway
hps03420
Nucleotide excision repair
hps03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPSH_07575
03430 Mismatch repair
HPSH_07575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hps03400
]
HPSH_07575
Enzymes [BR:
hps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPSH_07575
DNA repair and recombination proteins [BR:
hps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPSH_07575
MMR (mismatch excision repair)
Other MMR factors
HPSH_07575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ACD48906
LinkDB
All DBs
Position
complement(1469096..1471141)
Genome browser
AA seq
681 aa
AA seq
DB search
MDFEKSILDNLNEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLT
LTFTNKASKEMQERALKLLENQTLIPPLLCTFHRFGLLFLRQHMNLLKRACDFSVLDGDE
VKTLCKQLKISSFRASISQIKNGMVDLSMQDSECHKAYELYQNALKKDNLVDFDDLLFLS
LKILQDNETIAKETSERYHYIMVDEYQDTNALQLEFLKKLSFTHHNLCVVGDDDQSIYGF
RGADISNILNFSKHFKGVKVVKLETNYRSSAEILACANSLISHNQHRHKKTLQSFKGSHK
SVVCKEYLTQKEESLDVAYQIKALLKKGENLENIAILYRLNGLSHSIEESLNALNIPYRL
IGAVSFYERAEVKDALAFMHLVAKKDDRFFIRRVLNKPSRGLGKITQEWIFSLLDDEGLN
LEEALKLGVFKGKLNPKNEHALNKFIAMIGRLREAFEISVEEFCARFLEETNLLKSYEKE
DNYEEREGFVKELLALVKEHFKTNPTHSLLDFLNESVLDTHNTENAQKVSCMSVHMSKGL
EFKHVFVIGLEEGFFPHRGFNQESDLEEERRLAYVAITRAKEGLQLSYVQERSYFGRKIS
CSPSVFLEEAKLLKQDNPPKQDHKKDTPIKVGDLIRHKIFGTGRVLGVEKGLSGLCLKIN
CGGNVYDKISVKFVEKVDNGF
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggattttgaaaaaagcattttagacaatttaaacgaagcgcaaaaaatcgccgcaagc
cacattcaagggcctttgctgattttagcgggagctgggagcggtaagactaagacttta
acgagccgtttagcgtatttgattggcgcttgtggcgtgcctagcgagaacactttaacg
ctcactttcaccaataaagcgagtaaagaaatgcaagaaagggctttgaaattgttggaa
aaccaaacccttatcccccccttgctttgcactttccatcgttttggtttgctgttttta
aggcaacacatgaaccttttaaaaagagcgtgcgatttttcggtgttagatggcgatgaa
gtaaaaacgctgtgcaaacagcttaaaatttcaagctttagagccagtatttctcagatc
aaaaacggcatggttgatttaagcatgcaagatagcgaatgtcataaagcgtatgagctt
taccaaaacgcgcttaaaaaagacaatttagtggattttgacgacttgctttttttaagc
cttaagattttgcaagataatgaaaccatcgccaaagaaactagcgagcgctaccattac
attatggtagatgagtatcaagacacgaacgccttgcaattagaatttttaaaaaaattg
agtttcacgcaccataatttgtgcgtggtgggcgatgacgatcagagcatttatggtttt
aggggggctgatatttctaacattttaaatttttccaagcattttaaaggggttaaggtg
gtgaaattagaaaccaactaccgctccagcgctgaaattttagcgtgcgctaactccctt
attagccataaccaacaccgccacaaaaaaacgcttcaaagttttaaaggctcgcataaa
agcgtggtttgtaaagaatatttgacgcaaaaagaagagagcttggatgtggcttatcaa
atcaaagcccttttaaagaagggcgaaaatttagaaaatatcgctatattgtatcgctta
aacgggcttagccacagcattgaagagagcttgaacgctttgaatatcccctataggctt
attggagcggtaagtttctatgaaagagcagaggttaaagacgctttggcgttcatgcat
ttagtggctaaaaaagacgatcgcttttttatcaggcgcgttttaaacaagccctcaaga
ggccttggcaagatcacccaagaatggattttttctcttttagatgatgagggtttgaat
ttagaagaagcgctaaaacttggggtgtttaaaggcaaattaaaccctaaaaacgaacac
gctttgaataaatttatcgctatgatagggcgtttgagggaggcttttgaaatttcagta
gaggagttttgcgctcggtttttagaagaaaccaaccttttaaaaagctatgaaaaagaa
gacaattacgaagaaagagagggctttgttaaagagcttttagccttagtgaaagagcat
tttaaaactaaccccacgcattctttattggattttttgaatgaaagcgttctagatacc
cataatacagaaaacgcgcaaaaagtgagttgcatgagcgtgcatatgagtaaggggtta
gagtttaagcatgtgtttgtgatcgggttagaagaagggtttttcccgcatagggggttc
aatcaagaaagcgatttagaagaagaaaggcgcttggcttatgtagcgatcactagggct
aaagaaggattgcagctctcttatgttcaagagcgttcgtattttgggaggaaaatttct
tgctcgccctctgtgtttttagaagaagctaagttgctcaagcaagacaacccccctaaa
caggatcacaaaaaagatacgcccattaaagtgggggatttgatcaggcataagattttt
ggcaccgggagggttttaggcgtagaaaaaggcttgagcggtttgtgcttgaaaatcaat
tgcggagggaatgtctatgataaaatctcagtaaaatttgtagaaaaagtggataatggg
ttttga
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