Hydrogenophaga pseudoflava: HPF_00015
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Entry
HPF_00015 CDS
T06073
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
hpse
Hydrogenophaga pseudoflava
Brite
KEGG Orthology (KO) [BR:
hpse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpse03032
]
HPF_00015 (gyrB)
03400 DNA repair and recombination proteins [BR:
hpse03400
]
HPF_00015 (gyrB)
Enzymes [BR:
hpse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
HPF_00015 (gyrB)
DNA replication proteins [BR:
hpse03032
]
Prokaryotic type
DNA Topoisomerases
HPF_00015 (gyrB)
DNA repair and recombination proteins [BR:
hpse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HPF_00015 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
QBM26038
UniProt:
A0A4P6WV55
LinkDB
All DBs
Position
2727..5354
Genome browser
AA seq
875 aa
AA seq
DB search
MSEANKPADSGKDAVHTGEAGADSSNFQPKIDANQAGASEGYGEGAIQILEGLEAVRKRP
GMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHTDNSISVTDNGRGIPTGVK
MDDKHEPRRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVWLRLTVRREGQ
VHQIEFARGFVQNRIVEMRDGVEVSPMKVIGATEKRGTEVHFLPDTEIFKENNDFHYDIL
AKRLRELSFLNNGVRIRLKDERSGKEDDFSGAGGVKGFVEFINKGKQVLHPNCFHAIGDR
QSDQGTNIGVEVAMQWNSGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENDL
AKKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEDVVARLLTDYLQ
EKPNDAKIICGKIVEAAKAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYI
VEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLSSNEILTLITALGTGIGKAG
GEGSGGEGKDDFDVAKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQ
PPLYKVKNGKEELYLKDAPALDQYLLRIALNGAKVQTGGAANTVLEGDTLAELARKHQAA
ERVIERLSNFMDAEALRAIADGVSVKLDTVEEAEASAVAMQAKLAELSTTGVPPEVAGEF
DARSDKPILRISRRHHGNVKSSILTQDFVHGADYAALATAADTFRGLLGEGAKAQRGEGD
KQKEEKVGDFRQAMQWLISEAERTTSRQRYKGLGEMNPEQLWETTMDPQVRRLLRVQIDD
AIEADRVFTMLMGDEVEPRRDFIETNALRAGNIDV
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaagccaacaagcccgccgattccggaaaagacgccgttcacaccggtgaagca
ggcgccgacagctccaatttccagcccaagatcgacgcgaaccaggccggcgccagtgaa
ggctatggcgagggggcgatccagatcctggaaggcctggaggccgttcgcaagcgcccg
ggcatgtacatcggcgacacgtccgacggcaccggcctgcaccacctcgtcttcgaagtg
gtggacaactccatcgacgaagccctggccggccactgcgacgacatcgtcgtcaccatc
cacaccgacaactcgatcagcgtgaccgacaacggccgcggcatcccgaccggtgtgaag
atggacgacaagcacgagcccaggcgctcggccgccgaaatcgcgctgaccgagctgcac
gcgggcggcaagttcaaccagaacagctacaaggtctcgggcggcctgcacggcgtgggc
gtgtcctgcgtgaacgcactgtcggtgtggctgcgcctgacggtgcgccgcgaaggccag
gtccaccagatcgagttcgcgcgcggtttcgtgcagaaccgcatcgtcgagatgcgcgac
ggcgtcgaggtctcgccgatgaaggtgatcggcgcgaccgagaagcgcggcaccgaggtg
cacttcctgcccgacaccgagatcttcaaagagaacaacgacttccactacgacatcctg
gccaagcgcctgcgcgaactctcgttcctgaacaacggcgtgcgcatccgcctgaaggac
gagcgcagcggcaaggaagacgacttttccggtgccggcggcgtcaagggctttgtggag
ttcatcaacaagggcaagcaggtcctgcaccccaactgcttccacgccatcggcgaccgc
cagagcgaccagggcaccaacatcggtgtcgaggtggccatgcagtggaacagcggctac
aacgagcaggtgctctgcttcaccaacaacatcccgcagcgcgacggcggcacccacctg
accggcctgcgcgccgcgatgacgcgcgtcatcaacaagtacatcgaagagaacgacctg
gccaaaaaggccaaggtggaagtgaccggcgacgacatgcgcgaaggcctgtgctgcgtg
ctgtcggtcaaggtgcccgaacccaagttctccagccagaccaaggacaagctggtgtcc
agcgaagtgcgcggcccggtggaagacgtggtggcccgactgctgaccgactacctgcag
gaaaagcccaacgacgccaagatcatctgcggcaagatcgtcgaggccgccaaggcccgc
gaagccgcgcgcaaggcgcgcgagatgacgcgccgcaagggcgtgctcgacggcatgggc
ctgcccggcaagctggccgactgccaggagaaagaccccgccctgtgcgagatctacatc
gtcgagggcgactccgctggcggctcggccaagcagggccgagaccgcaaattccaggcg
atcctgccgctgcgcggcaagatcctgaacgtggaaaaggcgcgctacgagaagctgctg
agctccaacgaaatcctgaccctcatcaccgcgctgggcaccggcatcggcaaggccggc
ggcgaggggtcgggcggggaaggcaaggacgacttcgacgtcgccaagctgcgctaccac
cgcatcatcatcatgaccgacgccgacgtcgatggcgcccacatccgcaccctgctgctg
accttcttctaccgccagatgcccgaactggtcgagcgcggccacatctacatcgcgcag
ccgccgctgtacaaggtgaagaacggcaaggaagagctgtacctgaaggatgcgcccgcg
ctggaccagtacctgctgcgcatcgccctgaacggcgccaaggtgcagaccggtggcgcc
gccaacaccgtgctcgagggcgacaccctggccgaactggcgcgcaagcaccaggcggcc
gagcgcgtgatcgagcgcctctccaacttcatggacgccgaagcgctgcgcgcgattgcc
gacggcgtgagcgtcaagctcgacaccgtggaagaggccgaagccagcgccgtcgccatg
caggccaagctggccgagctgagcaccacaggcgtgccgcccgaagtggccggcgaattc
gatgcgcgcagcgacaaacccatcctgcgcatcagccgccgccaccacggcaacgtcaag
agcagcatcctcacgcaggacttcgtgcacggcgccgactacgccgccctggccaccgcg
gccgacaccttccgcggcctgctgggcgaaggcgccaaggcgcagcgcggcgaaggcgac
aagcagaaggaagaaaaggtcggcgacttccgccaggccatgcagtggctcatcagcgaa
gccgaacgcaccaccagccgccagcgctacaaaggcctgggcgaaatgaaccccgagcag
ctgtgggaaaccaccatggacccgcaggtgcgccgcctgctgcgcgtgcagatcgacgac
gcgatcgaagccgaccgcgtgttcaccatgttgatgggggatgaggtggagccgcggcgg
gatttcatcgaaaccaacgcgctcagagccggcaacattgacgtttaa
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