Hydrogenophaga pseudoflava: HPF_01005
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Entry
HPF_01005 CDS
T06073
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hpse
Hydrogenophaga pseudoflava
Pathway
hpse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPF_01005 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpse03019
]
HPF_01005 (recQ)
03400 DNA repair and recombination proteins [BR:
hpse03400
]
HPF_01005 (recQ)
Enzymes [BR:
hpse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPF_01005 (recQ)
Messenger RNA biogenesis [BR:
hpse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPF_01005 (recQ)
DNA repair and recombination proteins [BR:
hpse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HPF_01005 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
QBM26236
UniProt:
A0A4P6WUS8
LinkDB
All DBs
Position
complement(209508..211403)
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AA seq
631 aa
AA seq
DB search
MIDISSEGETLEACAEVLQSVFGYEAFRGPQAGIVTHVSDGGDALVLMPTGGGKSLCYQI
PAIVRQRAGHGVSIVVSPLIALMHDQVGALLEAGVDAAFLNSSLTSDEAQQIERRLLKGE
ITMLYAAPERLTTPRFLALLDSLHERGLLSLFAIDEAHCVSQWGHDFRPEYRELAVLHER
YAGVPRIALTATADDLTREDIVTHLQLQDARRFVSSFDRPNIRYTIVEKKDGTQQLLRFI
RDEHMNSQGHDAGIVYCQSRKRVEEVAALLVDHGLNALPYHAGLDSAVRQKHQDRFLREE
GLIMVATIAFGMGIDKPDVRFVAHLDMPKNIEGYYQETGRAGRDGEAADAWMVYGLQDVV
NQRRMIDESPAGDEFKQVLRGKLDALLALAEASDCRRVRLLSYFGEASQPCGNCDNCISP
PALHDATEAARKLLSCIYRVQQASGTAFGAGHLMDILRGKATDKIAQYGHDKLSTFGIGA
DLSESQWRALLRQLIAREAVRVDDAPYNTLHLTDGARPILKGEAQVWLREVTESKGSRRS
SRKSARDALAPDGQPLSLSERECLDALKAWRAEVAREHNLPAFVIFHDATLRAIAAEKPR
SMADLDGISGIGQKKRDAYGAEVLRVVSAFD
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacatctcctctgaaggcgagacgctggaagcctgcgccgaggtgctgcagtcg
gtcttcggctacgaggccttccgcggcccgcaggcgggcatcgtcacccacgtcagcgac
ggcggcgacgccctggtgctcatgcccacgggcggcggcaagagcctgtgttaccagatc
ccggccatcgtgcgccagcgcgccggccacggcgtgtccatcgtggtctcgccgctgatc
gcgctgatgcacgaccaggtgggcgcgctgctggaagccggcgtggacgcggccttcctc
aattccagcctcaccagcgacgaagcgcagcagatcgaacgccgcctgctcaagggcgag
atcaccatgctctacgccgcgcccgagcgactgaccacgccgcgcttcctggcgctgctc
gactcgctgcacgagcgcgggctgctcagcctgttcgccatcgacgaggcgcactgcgtg
agccagtggggccacgacttccggcccgagtaccgcgagctggcggtgctgcacgagcgc
tacgccggcgtgccgcgcatcgcgctcacggccacggccgacgacctgacgcgcgaggac
atcgtgacgcacctgcagctgcaggacgcgcggcgcttcgtcagcagcttcgaccgcccc
aacatccgctacaccatcgtcgagaagaaggacggcacgcagcagctgctgcgcttcatc
cgcgacgaacacatgaacagccagggccacgacgccggcatcgtctactgccagtcgcgc
aagcgggtggaagaagtggcggcgctgctggtggaccacgggctgaacgccctgccctac
cacgcgggcctcgactcggcggtgcgccaaaagcaccaggaccgtttcctgcgcgaagag
ggcctgatcatggtcgccaccatcgccttcggcatgggcatcgacaagccggacgtgcgc
ttcgtggcccacctggacatgcccaagaacattgagggctactaccaggaaaccggccgc
gccggtcgcgacggcgaggcggccgacgcctggatggtttatggcctgcaggacgtggtg
aaccagcgccgcatgatcgacgagagcccggcgggcgacgagttcaagcaggtgctgcgc
ggcaagctggacgctctgctggcgctggccgaagccagcgactgccggcgggtgcggctg
ctgtcgtacttcggcgaagccagccagccctgcggcaactgcgacaactgcatctcgccc
ccggccctgcacgacgccaccgaggcggcgcgcaagctgctgtcctgcatctaccgcgtg
cagcaggccagcggcacggccttcggcgccggccacctgatggacatcctgcgcggcaag
gccaccgacaagatcgcgcaatacgggcacgacaagctcagcaccttcggcatcggcgcc
gacctcagcgagagccagtggcgcgccctgctgcgccagctgatcgcgcgcgaagcggtg
cgggtggacgacgccccgtacaacaccctgcacctgaccgatggcgcccgccccatcctc
aagggcgaagcccaggtctggttgcgagaggtcaccgaatccaaaggcagccggcgcagc
agccgcaagtccgcccgcgacgcgttggcgcctgacggccagccgctgtcgctgtccgaa
cgcgagtgcctggacgcgctcaaggcctggcgcgccgaggtggcgcgcgagcacaacctg
ccggccttcgtgatctttcacgacgcgaccctgcgcgcgatcgccgccgagaaaccgcgc
tccatggccgatctggacggcatttccggcatcggccagaaaaagcgcgacgcctacggc
gccgaggtgctgcgcgtggtgagtgctttcgattaa
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