Hydrogenophaga pseudoflava: HPF_05935
Help
Entry
HPF_05935 CDS
T06073
Symbol
rhlE1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hpse
Hydrogenophaga pseudoflava
Pathway
hpse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPF_05935 (rhlE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpse03019
]
HPF_05935 (rhlE1)
Enzymes [BR:
hpse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPF_05935 (rhlE1)
Messenger RNA biogenesis [BR:
hpse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPF_05935 (rhlE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Helicase_C_2
DUF3450
APOBEC4_like
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QBM27215
UniProt:
A0A4P6WXV6
LinkDB
All DBs
Position
1203335..1204801
Genome browser
AA seq
488 aa
AA seq
DB search
MTQSFSELQLSPNLARAIAEMGYESMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFSLP
LLQRMLKHENASTSPARHPVRALVLLPTRELADQVADQIKQYAKHTQLRSTVVFGGMDMK
PQTLELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSY
LPKTRTTLLFSATFSPEIKRLASSYLQDPITIEVARSNATASTVEQHFYRVDDDDKRQTL
KQIVKERGVTQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALDAFKKGEV
DLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFVSGKDTRL
MADIEKLIGKKLELEALELEADRKPAGRFNDGQRAWREGDDEGRREIRQAREAREPREPR
EERRASRPARAPADPLFDKPYEPALAADAKPSWEAAAKPAATSRLSPNIKSRKKVPALFK
ASAPAENT
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgacccaatccttttccgaactccagctctcgcccaacctcgcccgtgccatcgcggaa
atgggctacgagagcatgacacccatccaggcgcaggccattccggtcgtgctgcaaggg
cgcgacgtgatgggtgccgcgcagaccggcaccggcaagacggcggccttctcgctgccc
ctgctgcagcgcatgctcaagcacgagaacgcctccacctcgcccgcacgccacccggtg
cgcgccctggtgctgctgccgacgcgcgaactggccgaccaggtggccgaccagatcaag
cagtacgccaagcacacccagctgcgcagcacggtggtgttcggcggcatggacatgaag
ccgcagacgctggagctcaagaagggtgtcgaggtgctggtggccacgccgggccgtctg
ctggaccacatcgaggccaagaactgcgtgctcaaccaagtcgagtacgtggtgctcgac
gaagccgaccgcatgctggacatcggcttcctgcccgacctgcagcgcatcctgagctac
ctgcccaagacccgcaccacgctgctgttctcggccaccttctcgcccgagatcaagcgc
ctggccagcagctacctgcaggacccgatcaccatcgaggtggcccgctccaacgccacg
gcctccacggtggagcagcatttctaccgcgtggacgacgacgacaagcgccagacgctc
aagcagatcgtcaaggagcgcggtgtgacgcaggccttcgtcttcgtcaacagcaagctc
ggctgcgcccgcctggcccgttcgctggagcgtgaaggtctcaagaccacggccctgcac
ggcgacaaaagccaggacgagcgcctgaaggcgctggatgccttcaagaagggtgaagtc
gacctgctggtctgcaccgatgtggctgcgcgtggtctggacatcaaggacgtgccggcg
gtgttcaacttcgacatcccgttcaacgccgaggactacgtgcaccgcatcggccgcacg
ggccgcgccggggcgtcgggtctggccgtgtcctttgtcagtggcaaggacacgcgcctg
atggccgacatcgagaagctgatcggcaagaagcttgagctcgaagcgctggagttggag
gccgaccgcaagcccgctggccgtttcaacgacggccagcgcgcctggcgcgaaggcgac
gacgaaggtcgccgcgagatccgccaggcccgcgaagcgcgcgagccccgtgaaccgcgc
gaagaacgccgtgcatcgcgtccggcgcgtgcgcctgctgacccgctgttcgacaagccc
tatgagcccgccctggcggcagacgccaagccgtcctgggaggccgcggcaaaaccggcg
gccaccagccgcctgtcccccaacatcaagtcccgcaagaaggtgccggcgctgttcaag
gcttcggctccggcggaaaacacctga
DBGET
integrated database retrieval system
