Hydrogenophaga pseudoflava: HPF_08195
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Entry
HPF_08195 CDS
T06073
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hpse
Hydrogenophaga pseudoflava
Pathway
hpse02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpse00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPF_08195 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpse03021
]
HPF_08195 (rpoD)
Transcription machinery [BR:
hpse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPF_08195 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r1_1
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
DUF6522
CA109-like
Cwf_Cwc_15
Motif
Other DBs
NCBI-ProteinID:
QBM27661
UniProt:
A0A4P6X1U7
LinkDB
All DBs
Position
complement(1669250..1671574)
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AA seq
774 aa
AA seq
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MPAKKASTPAPSTKAAQKPAAKAAAPEPKKKAPVPVTDKAPAKTAAKPAAKTTKAGKTKA
EELDTVDADEPAKKKPGRPAKAAADKPAAKRGRKPKAAAKEESDLDDADLSDIEEDLVEE
VVEEVADPAAPAEKVKPLRMKISKAKERALMKEFGLDETVLSEEEAKLRRERLKTLIKLG
KTRGYLTHGEINDHLPDKLVEAETLEVVVSLLNDMGVAVYEQTPDAETLLLSNAGPTAAT
EEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLNDMMA
AISESPATIAELLAMSEEIREGKVVISTVVDGFADADAADDYVAEEDFDDYDEADDDDGK
GGSKALTRKLEELKREALERFDTMRNLFEKLHKIYDKEGYGTPSYIKTQQAITETLMTIR
FTAKAIEKLCSTLRGQVDEVRKKERELRRIIVDKCGMPQEKFIADFPANLLNLKWVEKQA
AAGKPWSVVMERNIPPIQELQQGLITIQNSVVVPLSHLKDIHKRMNEGEANSRDAKKEMI
EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT
RSIADQARTIRIPVHMIETINKMNRISRQHLQEHGFEPDASILAEKMEMPEDKIRKIMKI
AKEPISMETPIGDDDDSHLGDFIEDQANTAPIEAAMQAGLREVVKEILDSLTPREAKVLR
MRFGIEMSTDHTLEEVGKQFDVTRERIRQIESKAVRKLKHPSRSDKLRSFIDSL
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcgaagaaagccagtacgcctgcccccagcaccaaagccgcccagaagcccgcc
gccaaggccgccgccccggagcccaaaaagaaagcccccgtccccgtgaccgacaaagcc
cctgccaagaccgccgccaagccggccgccaaaacgaccaaggccggcaagaccaaagcc
gaagaactcgacactgtcgacgccgacgaaccagccaagaaaaagcccggccgccccgcc
aaggccgcggccgacaagccggccgccaagcgcggccgcaagcccaaagctgccgccaag
gaagaaagcgacctggacgatgccgacctgagcgacatcgaagaggatctggtcgaagaa
gtcgttgaggaagtcgccgacccggcggcaccggccgagaaggtcaagccgctgcgcatg
aagatcagcaaggccaaggagcgcgcgctgatgaaggaattcggcctggacgaaaccgtc
ctgtccgaagaagaagccaagctgcgccgcgaacgcctgaagaccctgatcaagctgggc
aagacgcgcggctacctgacgcacggcgaaatcaacgaccacctgcccgacaagctggtc
gaggccgagacgctggaagtggtggtctcgctgctcaacgacatgggcgtggcggtctac
gaacagacgccggatgccgaaacgctgctgctgtccaacgccggccccaccgcagcgacc
gaagaggaagcggaagaggaagccgaagccgccctgtccaccgtggacagcgaattcggt
cgcaccaccgacccggtgcgcatgtacatgcgcgaaatgggcacggtggaactgctgacc
cgcgaaggcgaaatcgagatcgccaagcgcatcgaaggcggcctcaacgacatgatggcc
gcgatcagcgagagcccggccaccattgccgagctgctggccatgtcggaagagatccgt
gaaggcaaggtcgtcatctccaccgtggtggacggcttcgccgacgccgatgcggccgac
gactacgtggccgaagaagacttcgacgactacgacgaggccgacgacgacgatggcaag
ggcggctccaaggccctgacccgcaagctcgaagaactcaagcgcgaggcgctggagcgc
ttcgacaccatgcgcaacctgttcgagaagctgcacaagatctacgacaaggaaggctac
ggcacgccctcgtacatcaagacgcagcaggccatcaccgaaacgctgatgaccatccgc
ttcaccgccaaggcgatcgagaagctgtgcagcacgctgcgcggccaggtcgacgaggtg
cgcaagaaggagcgcgagctgcgccgcatcatcgtggacaagtgcggcatgccgcaggag
aagttcatcgccgacttcccggccaacctgctgaacctcaagtgggtcgaaaagcaggcc
gccgccggcaagccctggagcgtggtgatggaacgcaacatcccgccgatccaggaactg
cagcagggcctgatcacgatccagaacagcgtggtggtgccgctgtcccacctcaaggac
atccacaagcggatgaacgagggtgaggccaattcgcgcgacgccaagaaggagatgatc
gaggccaacctgcgcctggtgatctccatcgccaagaagtacaccaaccgtggtctgcag
ttcctggacctgatccaggaaggcaacatcggcctgatgaaggcggtggacaagttcgaa
taccgccgcggctacaagttctcgacctacgccacgtggtggatccgccaggccatcacc
cgctcgatcgccgaccaggcgcgcaccatccgcatcccggtgcacatgatcgagacgatc
aacaagatgaaccgcatcagccgccagcacctgcaggagcacggcttcgaacccgacgcg
tccatcctggccgagaagatggagatgcccgaggacaagatccgcaagatcatgaagatt
gcgaaggagccgatctcgatggaaacccccatcggcgacgacgacgattcgcacctgggc
gatttcatcgaggaccaggcgaacacggcaccgatcgaggccgccatgcaggcgggtctg
cgcgaggtggtcaaggagatcctggacagcctgacgccgcgcgaggccaaggtgctgcgc
atgcgtttcggtatcgagatgtcgaccgaccacacgctggaagaagtgggcaagcaattc
gacgtgacgcgcgagcgcatccgtcagatcgagtcgaaggcggtgcgcaagctcaagcac
ccgagccgttcggacaagctgcgcagcttcatcgattcgctgtag
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