Hydrogenophaga pseudoflava: HPF_08335
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Entry
HPF_08335 CDS
T06073
Symbol
rhlE2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hpse
Hydrogenophaga pseudoflava
Pathway
hpse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPF_08335 (rhlE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpse03019
]
HPF_08335 (rhlE2)
Enzymes [BR:
hpse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPF_08335 (rhlE2)
Messenger RNA biogenesis [BR:
hpse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPF_08335 (rhlE2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
AAA_22
DUF621
Motif
Other DBs
NCBI-ProteinID:
QBM27689
UniProt:
A0A4P6WYJ9
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All DBs
Position
complement(1698989..1700761)
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AA seq
590 aa
AA seq
DB search
MKFEDLNLAPAIVQAVREHGYETPTPIQVEAIPAVLAGRDLLGGAQTGTGKTAAFTLPML
QRLSQSERGQNRFGGNAIRALVLTPTRELAAQVEESVRVYGKHLSLTSTVVFGGVGMNPQ
INAMKKGVDILVATPGRLLDLQQQGFLDLSQVQILVLDEADRMLDMGFIHDVKKVLALLP
QSKQSLLFSATFSDEIRDLANNLLKDPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLVH
IINQHNWSQVLVFTRTKFGANNVADYLTKNGIKAMALHGNKSQGARTQALADFKSGEIRA
LVATDIAARGIDIDELPHVVNYEIPNVCEDYVHRIGRTGRAGREGQAVNLVSLDEEGFMM
DIERFTKQQIPVEIFQEFMPEPGEKAEPIAMGRQTIWGGAGKPPSRDVMAAAAKAARQEM
MTRIREKKAEGGNSGRSNNNGGGQPRQRAESGEGQPPAEGQGEGRRRNRNRRGGGGGNGQ
PRQANANGNPNHNGQPRQHQERTPRAPREDRYEGEDRPERQPGPNAHLGSLRIREPRARA
ASPGGQPDPLRTSIDSMRTGNRNKNKGGGGQRGGNGGGADPLRTSYGRIR
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaagatctgaacctggctccggccatcgtgcaagctgtgcgcgagcacggt
tacgagacccccacccccatccaggttgaggccattccggccgtcctggccggtcgcgac
ctgctcggtggcgcccagaccggcaccggcaagaccgctgccttcaccctgccgatgctg
cagcgcctctcgcagagcgagcggggccagaaccgctttggcggcaacgccatccgcgcc
ctggtgctcacccccacccgcgaactcgcggcccaggtggaagaatccgtgcgcgtctac
ggcaagcacctctcgctgacctccaccgtcgttttcggcggcgtcggcatgaacccgcag
atcaacgccatgaaaaagggcgtggacatcctggtcgccacccccggtcgcctgctggac
ctgcagcagcagggcttcctggacctctcgcaggtgcagatcctggtgctcgacgaagcc
gaccgcatgctggacatgggcttcatccacgatgtcaagaaggtgctagccctgctgccc
cagagcaagcagagcctgctgttctcggccaccttcagcgacgagatccgcgacctggcc
aacaacctgctcaaggacccgcagagcatccaggtgaccccgcgcaacaccacggtgcag
cgcatcacccaggtgatccaccccgtgggccgcggcaagaagaaggccctgctggtgcac
atcatcaaccagcacaactggagccaggtgctggtcttcacccgcaccaagttcggcgcc
aacaacgtggccgactacctgaccaagaacggcatcaaggccatggcgctgcacggcaac
aagagccagggcgcccgcacccaggcactggccgacttcaagagcggcgagatccgcgcc
ctggtggccaccgacatcgcggcccgcggcatcgacatcgacgagctgccacacgtcgtc
aactacgagatccccaacgtctgcgaagactacgtgcaccgcatcggccgcaccggccgt
gccggccgcgaaggccaggcggtcaacctcgtgagcctggacgaagaaggcttcatgatg
gacatcgagcgcttcaccaagcagcagattccggtggagatcttccaggagttcatgccc
gagccgggtgagaaggccgaacccatcgccatgggccgccagaccatctggggcggcgcg
ggcaagccgcccagccgcgacgtgatggccgccgccgccaaggccgcacgccaggaaatg
atgacccgcatccgcgagaagaaggccgagggcggcaacagcggacgcagcaacaacaac
ggcggtggccagccgcgccagcgcgccgaatccggtgagggccagccccccgccgagggc
cagggcgaaggccggcgccgcaaccgcaaccgccgtggcggtgggggcggcaacggacaa
ccgcgccaggccaacgcaaacggcaaccccaatcacaacggtcagccgcgccagcaccag
gagcgcacgccgcgcgcaccgcgcgaagaccgctacgaaggcgaagaccgccccgagcgc
cagcccggccccaatgcccacctgggcagcctgcgcatccgggaaccgcgcgcccgcgcc
gcctcgccgggcggccagcctgatccgctgcgcaccagcatcgattcgatgcgcaccggc
aaccgcaacaagaacaagggcggtggtggacagcgcggtggcaacggcggcggtgccgat
ccgctgcgcaccagctacggccgcatccgctga
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