Hydrogenophaga pseudoflava: HPF_09780
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Entry
HPF_09780 CDS
T06073
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
hpse
Hydrogenophaga pseudoflava
Brite
KEGG Orthology (KO) [BR:
hpse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hpse03009
]
HPF_09780 (rlmD)
Enzymes [BR:
hpse01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HPF_09780 (rlmD)
Ribosome biogenesis [BR:
hpse03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HPF_09780 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
RrnaAD
Methyltrans_SAM
Methyltransf_12
PCMT
Motif
Other DBs
NCBI-ProteinID:
QBM27975
UniProt:
A0A4P6WZW6
LinkDB
All DBs
Position
2008260..2009642
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AA seq
460 aa
AA seq
DB search
MPPSAGLPEGQLFVESLDIEAQGIAHRPDGKVVFIDGALPFEIVSAKVHRKKNNWEAATL
TEIHRESPQRVTPGCPHFGLHEGACGGCKMQHLHASSQVAIKQRVLEDNLWHLAKVKAET
LLRPIEGPAWGYRYRARLSVRFVHKKGVVLIGFHERKSRYVADMQVCRVLPPHVSNLLMP
MRELIYGMDARETCPQIELACGDDVTALVLRHLEPLSDDDLARLRAFGQQNGVQWWLQPK
GPDTVRLLDEGGPQLSYRLPEFGINMPFKPTDFTQVNPHINRVLVARALRLLDAQKSERV
IDWFCGLGNFTLPIATGAGEVLGIEGSEALVARSRENLAFNQQGRPSPLAPTTFVARNLF
EMTTEMLVADGVADKWLVDPPREGAFALSKALADLHQQPELRGSWTPPRRIVYVSCNPAT
LARDAGLLVHQAGYRCTAAGVVNMFPHTAHVESMAVFELP
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgccgccctccgccggtctgcccgaaggccagctgtttgtcgagtcgctcgacatcgag
gcgcagggcatcgcccaccggcccgacggcaaggtcgtgttcatcgacggcgcgttgccg
ttcgagatcgtcagcgccaaggtccatcgcaagaagaacaactgggaagcggcgacgctg
accgagatccatcgcgagtcgccccagcgcgtcacgcccggctgtccgcatttcggtctg
cacgaaggcgcgtgcggtggctgcaagatgcagcacctgcatgccagctcgcaggtggcc
atcaagcagcgcgtgctggaggacaacctctggcatctggccaaggtcaaggccgagacg
ttgctgcgcccgatcgaagggccggcctggggctaccgctaccgcgcgcgcctgtcggtg
cgcttcgtgcacaagaagggggtggtgctgatcggcttccacgagcgcaagagccgctac
gtggccgacatgcaggtctgccgtgtgctgccgccccacgtgagcaacctgctcatgccc
atgcgcgagctgatctacggcatggacgcgcgcgagacctgtccgcagatcgaactggcc
tgcggcgacgacgtgaccgccctggtgctccggcatctggagcccctgagcgacgacgat
ctggcccggctgcgcgccttcggtcagcagaacggcgtgcaatggtggttgcagcccaaa
ggaccggacacggtccggctgctggacgagggcggaccgcagctgagctaccgcctgccc
gaattcggcatcaacatgcccttcaaaccgaccgacttcacccaggtcaatccgcacatc
aaccgggtgctggtggcgcgcgcgctgcgcctgctggatgcgcagaagagcgaacgtgtg
atcgactggttctgcggtctgggcaacttcaccctgccgattgccacgggcgccggcgag
gtgctgggcattgagggcagcgaggcgctggtggcgcgctcgcgcgagaacctcgcgttc
aaccagcaggggcgcccgtcaccgctggcgcccacgaccttcgtggctcgcaacctgttc
gagatgacgaccgagatgctggtggccgatggggtggcggacaagtggctggtggacccg
ccgcgggaaggcgcgtttgcgctgtccaaggcgctggccgacctgcaccagcagccggag
ctgcgtggcagctggacgccgccccggcgcatcgtctacgtgagctgcaacccggccacg
ctggcgcgcgacgccggcctgctggtgcaccaggcgggctaccgctgtacggcggcaggg
gtggtcaacatgttcccgcacacggcgcacgtcgaaagcatggcggtgttcgagctgccc
tga
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