Hydrogenophaga pseudoflava: HPF_09900
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Entry
HPF_09900 CDS
T06073
Symbol
polC3
Name
(GenBank) DNA polymerase III PolC-type
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hpse
Hydrogenophaga pseudoflava
Pathway
hpse03030
DNA replication
hpse03430
Mismatch repair
hpse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPF_09900 (polC3)
03430 Mismatch repair
HPF_09900 (polC3)
03440 Homologous recombination
HPF_09900 (polC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpse03032
]
HPF_09900 (polC3)
03400 DNA repair and recombination proteins [BR:
hpse03400
]
HPF_09900 (polC3)
Enzymes [BR:
hpse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HPF_09900 (polC3)
DNA replication proteins [BR:
hpse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HPF_09900 (polC3)
DNA repair and recombination proteins [BR:
hpse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HPF_09900 (polC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
PAS_4
DEDDh_C
RNase_H_2
DNA_pol_A_exo1
Cortex-I_coil
Motif
Other DBs
NCBI-ProteinID:
QBM27999
UniProt:
A0A4P6WZ75
LinkDB
All DBs
Position
2034353..2036548
Genome browser
AA seq
731 aa
AA seq
DB search
MSLQKKTDPRLWWLLGAAAVASLLWLGATFGLIGSAMDAQERQAVLQTVGDRLVLIVLTW
AAGMGVIAWGLKRWFDLWVTPSVQLAEEAQVLLKTDVVRALTPKGNAETKVLVGLFNQLV
AQREDLRREMDHKVHEAARGIEQEKSRLAALMSELTQSVVVCNLDGRILLYNNRARMQFR
ALSQAPGVAGGAELIGLGRSVYSVFDRKLVAHALENIQQRMARGAAQPSAQFVTTTPAGQ
LLRVQMAPVRAPSGGGAEDSSPALTGFVLMLDNITREFEVEAAKDQVLHTLTERSRAALA
NMQAALDMLDYPDLDAAMRERFLGVIRDETTALSRRIGDLEAGSADSLKTRWPLEDMLGV
DFVTAALRRIEVATSVPVSAAEVDGGLWLRIESFSLIQALAYLAGRLSDEFDVRFVQLRL
QPAAGSAGKAWLDLIWSGQAMSTETVMSWEMDPMKVGDETLRLTVRDVVERHNGAFWFER
ERIRHQAFFRFLLPLASPQEQVDAATFVRSDSRPEYYDFDLFKTTEQTRSMDDRLLTELT
YTVFDTETTGLNPSQGDEIIQIGAARLVNNKLLRQECFEQLVDPKRPIPPATIPIHGIQP
EMVIGQPTIDQVLPAFHAFAQDTVLVAHNAAFDMRFLQLKEGQTGVVFDQPVLDTLLLSA
VIHPNQDSHRLEAIAERFNVTVIGRHTAMGDAMVTAEVFLKLIPLLAEKGIHTLGQAREA
AQKTYYARIRY
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttcagaagaagaccgacccgcgcctgtggtggttgctgggcgcggccgcggtg
gcctctttgctgtggctgggggcgaccttcggcctcatcggctctgccatggatgcgcag
gagcgccaggcggtgctgcagaccgtgggcgaccggctggtgctgatcgtgctgacctgg
gcggcgggcatgggggtgatcgcctggggactcaagcgctggttcgacctctgggtgacg
ccctcggtgcagctggccgaggaggcccaggtgctgctcaagaccgacgtggtgcgcgca
ctcacgcccaagggcaatgccgaaaccaaggtgctggtgggcctgttcaaccagctggtg
gcgcagcgggaagacctgcgccgcgagatggaccacaaggtgcacgaggcggcgcgcggc
atcgagcaggagaaaagccggttggcggcgcttatgtcggaactgacccagagcgtggtg
gtctgcaacctggacgggcgcatcctgctctacaacaaccgggcgcgcatgcagttccgc
gcgctgtcgcaggcgccgggcgtggccgggggcgccgagctgatcgggctggggcgttcg
gtctacagcgtgttcgaccgcaagctggtggcgcacgcgctggagaacatccagcagcgc
atggcgcgcggcgccgcgcaaccctcggcccagttcgtcaccaccacgccggccgggcag
ctgctgcgggtgcagatggcgccggtgcgtgcgccgtctggcggtggcgccgaggactcg
agcccggcattgacaggtttcgtgctcatgctggacaacatcacgcgcgagttcgaggtc
gaggcggccaaggaccaggtgctgcacacgctgaccgaacgcagtcgggcggcgctggcc
aacatgcaggcggcgctggacatgctggactaccccgacctggatgcggccatgcgcgag
cgtttcctgggtgtgatccgggacgagacgacggccctcagccggcgcattggcgatctg
gaggccggctcggccgacagcctcaagacccgctggccgctggaggacatgctgggcgtc
gacttcgtgacggcggctctgaggcgcatcgaggtggcaacctctgtgccggtgtcggcc
gccgaggtggatggcgggctgtggttgcggatcgagagcttctcgctgatccaggctctg
gcgtacctggcggggcgcctgtccgacgagttcgacgtgcgcttcgtgcagctgcgcctg
cagccggccgccggctcggcgggcaaggcctggctggacctgatctggagcggccaggcc
atgagcaccgaaaccgtgatgagctgggagatggatccgatgaaggtgggggacgagacc
ctgcggctgacggtgcgcgacgtggtcgagcggcacaacggcgccttctggttcgagcgc
gagcgcatccgccaccaggccttcttccgcttcctgctgccgctggccagcccgcaggaa
caggtggatgccgccaccttcgtacgcagcgacagccgacccgagtactacgacttcgac
ctgttcaagaccaccgagcagacgcgctcgatggacgaccgcctgctgaccgagctgacc
tacaccgtgttcgacaccgagaccacgggcctgaacccgtcgcagggggacgagatcatc
cagatcggtgccgcgcgcctggtgaacaacaagctgctgcggcaggagtgcttcgaacag
ctggtggacccgaagcggcccatcccgccggccaccattccgatccacggcatccagccc
gaaatggtgatcggccagccgaccatcgaccaggtgctgccggccttccacgccttcgcg
caggacacggtgctggtggcgcacaacgcagcgttcgacatgcgcttcctgcagctcaag
gaaggacagaccggcgtggtgttcgaccagccggtgctggacacgctgctgctgtcggcg
gtcatccacccgaaccaggactcgcaccgcctggaagcgatcgcggagcgtttcaacgtc
accgtcatcggccgccacaccgcgatgggcgacgccatggtgacggccgaggtgttcctc
aagctgattccgctgctggccgaaaagggcatccataccctgggccaggcgcgcgaagcc
gcgcagaagacctactacgcccggatcaggtactga
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