Hydrogenophaga pseudoflava: HPF_11000
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Entry
HPF_11000 CDS
T06073
Symbol
lgrD
Name
(GenBank) Linear gramicidin synthase subunit D
Organism
hpse
Hydrogenophaga pseudoflava
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
Condensation
PP-binding
Thioesterase
AMP-binding_C
AMP-dom_DIP2-like
Motif
Other DBs
NCBI-ProteinID:
QBM28216
UniProt:
A0A4P6X0X2
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All DBs
Position
complement(2268150..2274155)
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AA seq
2001 aa
AA seq
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MPTSDVQYAHLRELLRKRVADYGEHAAYVFLGHGLETSHSLSYAALGQSAETIAQRLRAR
IGPGDRVLLAFDNHLDAVQLFWGCILAGAIPVPAPAPDNRNARNSESRLLGIANNADVAL
AVTDEGHIEAGRTQIPERTWCTLDTLLNEPLQTDAVAPSPEGLDENPVAYLQYTSGSTSA
PRGVEITHDNVLAQCRSLVSSVDTPRMKALVWLPWFHDYGLVHGVLQPLYSGGTSFLMST
VQFLLHPLKWLEAIARHGVTHSGAPNFAYAACVQALARAPQWNARLDSWRYATCGAEPVR
ATTLDAFSQAFTPFGFHRAALAPSYGLAEAVLAVTVKNAATPLQQITLDAQAIERHEVRP
ADHEATGTRTLVGCGSALPGFQLRIVDPDTRTPCAPDRIGEIWVAGPSVGQGYWGQPDVS
AEHFGGTLAPEVADPTRYLRTGDLGFLHGGELFVAGRRKDLIIANGRNLYPQDLEQTAES
AHPGIRGGGVIAISVDKGDREAVVMLVECSRRPSPDVVRQLVDAVHKRVAAEHQVDLHDI
VPLRTGTLPRTSSGKPQRGAARRLYLEGRLEPLRLSAQSSTNTATDHSANAALLDSLTLL
WSEILGHEVIDHDANFFDLGGDSLLATQLVSRLRTRLGLDLPISAVFETPTVRGLAERLM
QLSPTPDSVVASPSVPAAATPSAARGPGSRLGLSFSQERMWFMHELAPQSSAYNIPLAMR
LKGPLEVAALQKAMDRVVERHEVLRTRFVKTADGVFAEVVPPPAVPLQPLRLATEGRGVP
DGVLRRHLADVTCQPFVLDQCPLLRAQLIHLAEHDAVLLIVMHHIVSDQWSFAELGRELA
AHYSALVSGSEACLPELPIQYADYAVWHRDWFETERRSSELAYWSQRLNGLELLPLNNDL
QRPLEQSFRGAALRFPLEHEHIAGLRALGAAHGASLSMVLIAALNVLLHRHTGKTDIGIG
VPIANRHHLASENLIGTFVNTLVFRTDLDGNPDFLTVLSRVRTVSLEAFSHQDMPFEVLV
RELAARPDSSRQPLFNVLFNMVNTQARDCHFEGLTWSRLDFDRASTQFDLSVVVDVMYDQ
AFTIEFATDLFVPETVQRMGEHLLQILRIAIQAPDSRVATLPLLGEAEREHLNQWSHGPV
EAPVAASAHAWVTRGLLQSAQRPALVHGAARLTHHELDEASNRLARLLRQRGVARGCRVG
VCLPRSHELVIVLLAILKSGAAYVPLDPDYPRQRLSDQMLDAELALLVSHSSVVLDEDQT
PRLLVDRDRAQIDAAAPHRLPDDALLDARPEDPAYLIYTSGSTGRPKGVAVPHRAMVNLL
ESMARAPGCTVHDRLLAVTTPSFDIAVLELFLPLGMGGTVVVASQADATDGRALAELLAR
EDITVLQATPSRWHLLLDAGWAGNPRLKALVGGEPLTPDLASQLLARCGEVWNMYGPTET
TVWSSCWRVSPGAVQAIDLGRPVLNTSIQVLDPHLQPCPIGVPGEIYIGGTGVAVGYHRQ
AALTAERFIDQPDAPDPLVTRIYRTGDRGRWRCDGSLEHGGRLDDQIKLRGFRVELGEIE
SRLLCHEAIARAVVMLREDSPGQPRLVAYVVPRGPLPSRDELREHLRRWLPDHMVPGLFV
ALDSIPVLPNGKTNRRALPAPSVNPSGGRTSLTPPRNPTETVILSIWQAALQTETIGIHD
NFFDLGGHSILAVGVVSRIESALQRPCALALLFKHPTVAELAEALSQTSPGDHKDIPVAV
LQPLGQGPGLFLLAGAEMYRRLAQLLDPGMPVYGVFSQTEIDLLEQPMELAPPAVTVETL
AREYKDLIRGIQPHGPYFLGGFSIGGLLAFEVARQLQTEGETIGLIALLDSRLPGHGFRH
LVAGVVRRLRLLRRGGLGHVLHVYRVFRHQTEHRHEPGSRRIQVYAKAMRDHEATPCDLP
AVFLQAGDDLSTAPAYGWRSLLPRLTIERVPGKHMAILEPPHVEVLAAAMRPHLADARRM
GTSPVQTGHTASPSSTRASTT
NT seq
6006 nt
NT seq
+upstream
nt +downstream
nt
gtgcccacctctgatgtccagtacgcccatctgcgcgaactgctgcgcaagcgtgtggcg
gactacggggaacacgcggcctacgtgttcctggggcacggcctggaaaccagccactcg
ctgagctacgccgcgctgggccagtcggccgaaaccatcgcgcagcgtctgcgtgcgcgc
atcgggccaggggatcgggtgttgctcgcgttcgacaaccacctggacgctgtgcagttg
ttctggggctgcatcctggccggcgccatccccgtcccagcgcctgcgccggacaacagg
aacgcacggaacagcgaatcgcgtttgctgggcattgccaacaatgcggatgtcgcgctg
gccgtgaccgacgagggacacatcgaagccggccgcacccagatccccgaacgcacctgg
tgcacgctggacacccttctgaacgaaccgctgcagaccgacgcggtggcgccgtcaccc
gaaggcctggacgagaacccggtggcgtatctgcagtacacctccgggtccacgagcgcc
ccgcggggcgtcgagatcacccacgacaacgtgctggcccagtgccgctcgttggtgagc
agtgtggacacgccccggatgaaggcactggtctggctgccctggttccacgactacggc
ctggtgcacggagtgctccagccgctgtactcgggtggcacctcgttcctgatgtccacc
gtgcagttcctgctgcaccccttgaagtggctggaggccattgcccggcatggcgtcacc
cacagcggggcacccaacttcgcctacgccgcctgcgtgcaggcactggcccgcgcaccg
caatggaacgcccgtctggacagctggcgatacgccacctgcggcgcggaaccggtgcgt
gccaccacgctggacgcgttctcgcaggccttcacgcctttcggattccaccgtgcggcg
ctggcgccatcctacggactggcggaagcggtgctcgcagtcaccgtgaagaatgccgcc
acaccgctgcaacagatcacgctggatgcgcaggccatcgaacgccacgaagtgcgacca
gccgaccatgaagcgaccggcaccagaacgctggtgggttgcggctcggcgctgccgggt
ttccagctgcgcatcgtcgatcccgacaccaggacgccctgcgcccccgaccggatcggc
gagatctgggtggccggaccgagcgtgggccagggctactggggacagcccgacgtctcc
gccgagcactttggcggaacccttgcccccgaagttgccgaccccacgcgctacctgcgc
accggcgacctgggtttcctgcacggcggcgagctgttcgtcgccggccgccgcaaagac
ctgatcatcgcgaacggccgcaacctctacccccaggacctggagcagacagccgaatcg
gcgcaccccggcatccggggcggtggcgtcatcgccatttcggtggacaagggagaccgg
gaagcggtcgtgatgctggtcgagtgcagccggcgcccctcgccggacgtggtgcggcag
ctggtcgatgccgtccacaagcgggtggccgcggagcaccaggtcgatctgcacgacatc
gttcccctgcgcaccggcaccctgccccggacctccagcggcaagccgcagcgcggcgcg
gcgcggcgcctctatttggaggggcggctggagcccctgcgcctgtcggcccaatcctcc
acaaacacggcgacggaccactccgccaatgccgcgctgctggacagcctgaccctgctt
tggtccgagatcctcgggcacgaggtgatcgaccacgacgcgaacttcttcgacctgggt
ggcgattcgttgctggccacacagctggtctcgcgtctgcgcacgaggcttggcctcgac
ctgcccatcagcgcggtgttcgagacgcccacggtgcgcggactcgccgagcggctgatg
cagttgtcgcccacgccggacagcgttgtggcgagcccatcggtgccggccgcggccaca
ccttcagcggcgcgcggccctggcagccggctgggcctgtcgttctcccaggagcgcatg
tggttcatgcacgaactggcaccgcagagcagcgcgtacaacatcccgctggccatgcgg
ttgaaggggccgctggaggtggcggccctgcagaaggccatggatcgcgtggtcgagcgc
cacgaagtcctccgcacacgctttgtcaagaccgctgacggagtgtttgccgaggtggtg
ccgccaccggccgtgccccttcagccgttgcggctggccaccgagggacgcggtgtgccc
gacggggtactgcgccgccatctggccgatgtcacctgccagccctttgtgctggaccag
tgcccgctgctccgcgcgcagctcatccacctggccgaacacgatgcggtgctgctgatc
gtgatgcaccacatcgtcagcgaccagtggtcgttcgcggagctggggcgcgagctggcg
gcgcactacagcgccctggtgtccgggtccgaggcctgcctgcccgagctcccgatccag
tacgcggactacgcggtctggcaccgggactggtttgaaaccgagcggcgaagcagcgag
ctcgcgtactggtcgcagcggctgaacggcctggagctgctgccgctgaacaacgacttg
caacgccccctggagcagagcttccgcggtgcggcgttgcgctttccactggagcacgag
cacatcgccggcctgcgcgcgctcggcgcggcgcacggggccagcctgtccatggtgctg
atcgcggcactcaatgtgctgctgcatcggcacacgggcaagaccgacatcggcatcggc
gtgcccattgccaaccggcaccatctggcctccgagaacctcatcggcaccttcgtcaac
accctggtgttccggaccgatctggacggcaacccggacttcctcacggtgctttcgcgc
gtgcgcaccgtctccctggaggccttttcgcaccaggacatgcccttcgaggtgctggtc
cgcgaactcgcggcccggccggacagcagccgccagccgctgttcaacgtgctcttcaac
atggtgaacacgcaggcccgggactgccacttcgaaggcctgacctggtcgcggctggac
ttcgaccgggcgtcgacccagttcgacctgagtgtggtggtcgacgtgatgtacgaccag
gccttcacgatcgagttcgccaccgacctgttcgtgccggagacggtgcagcgcatgggc
gagcacctgctgcagatcctgcgcatcgccatccaggcgccggactcccgcgtggccaca
ctcccgctgctgggcgaggccgaacgcgagcacctgaaccagtggtcgcatggccccgtc
gaggcacccgtcgccgcatcggcgcacgcctgggtgacccgggggttgctgcagtcggcc
cagcggcccgcgctggtccacggcgctgcgcggctgacccaccacgaactggacgaggct
tcgaaccggctggcgaggctgctgcgccagcgcggcgttgcgcggggttgccgcgtgggc
gtctgcctgccccgcagtcatgaactggtgatcgtgctgctggccatcctcaaatcaggc
gcggcctacgtgcccttggaccccgactacccccggcagaggctgagcgaccagatgctg
gacgccgagctggcgctgctggtgagccacagttcggtggtgctggacgaggaccagacc
ccccgcctgctggtcgatagggaccgcgcgcagatcgacgcggccgcaccgcaccggctg
ccggacgatgccctgctcgatgcccgcccggaagacccggcctacctgatctacacctcc
ggctccaccggtcggcccaagggggtcgccgtgccacaccgggccatggtgaacctgctg
gagagcatggcgcgcgcgcccggctgcaccgtgcacgaccggttgctggccgtgaccacc
cccagcttcgacatcgccgtcctggagctgtttctccccttgggcatgggcggcaccgtg
gtggtggccagccaggccgacgccaccgatggtcgggcgctggccgagctgttggcgcga
gaggacatcaccgtgctgcaggccacaccgtcgcgctggcacctgctgctcgacgcaggt
tgggctggcaacccgcggctcaaggcgctggtgggcggcgagcccctgacgcccgatctt
gccagccagctgctcgcccgctgcggcgaggtctggaacatgtacggccccaccgaaacc
acggtgtggtccagctgctggcgggtgtctccgggcgccgtccaggccattgacctgggc
cgcccggtgctcaacacctcgatccaggtgctcgacccgcacctgcaaccctgccccatc
ggcgtaccgggtgagatctacatcggcggcaccggcgtggccgtcggctaccaccggcag
gcggcactgaccgccgagcgtttcatcgaccagcccgatgcaccggacccgctcgtcacc
cgcatctaccgcacgggggaccgcgggcgctggcggtgcgacgggtcgctggagcatggc
ggccggctggacgaccagatcaaactgcgcgggttccgggtggagctcggggaaatcgag
tcccggctgctctgccacgaggccatcgcgcgtgcggtggtcatgctgcgcgaggactcg
ccaggtcagccccggctggtcgcctacgtggtccccagagggcctctgccttctcgcgac
gagctgcgcgagcacctgcgccgctggctgccggaccacatggtgcccggcctgtttgtc
gcactggacagcatcccggtgctgcccaacggcaagaccaaccgccgtgcgcttccagcg
ccctccgtcaatccttcgggagggcgcacctcgctgaccccgccccgcaaccccaccgaa
acggtcatcctatccatctggcaagccgccctgcagaccgaaacgatcggcatccacgac
aacttcttcgacctcggcgggcactcgatcctggccgtgggggtggtcagccgcatcgag
tcggcgctgcaacgaccctgcgcgctggccctgctgttcaagcatcccacggtggcggag
ctggccgaggcgctgtcgcagacctcgcccggggaccacaaggacatcccggtggcggtg
ctgcaaccccttggtcagggtcctggcctcttcctgctggcaggcgcggagatgtacagg
cggctggcgcagctgcttgatccgggcatgccggtgtacggcgtgttctcacagaccgaa
atcgacttgttggaacagccgatggagttggcgcctcccgcggtgaccgtggagacgctg
gcccgggaatacaaggatctgatccgaggcatccagccgcacggcccctatttcctcggt
ggcttttcgatcggcggcttgctggcgttcgaggtggcacgacagctgcagacagaaggc
gaaaccatcggcctgatcgccttgctcgactccagattgcccggacatggcttcaggcac
ctggtggcgggggtggtcaggcgcctgcgcctgctccggcgcggggggctggggcacgtc
ctgcacgtctaccgtgtgttccggcaccagaccgaacaccgacacgaacccggcagtcgg
cgcatccaggtctatgccaaggccatgcgcgaccacgaggccacaccctgtgacctgccc
gccgtcttcctgcaagccggtgacgacctgtccacggcgccggcctatggctggcgctcg
ctgctgccacggttgaccatcgaacgcgtgcctggaaaacacatggccatcctggagcca
ccccatgtggaggtgctggccgcagcgatgcgcccgcacctcgccgacgccagacgcatg
ggcacttccccggtccagaccggtcatactgcgtcgccctcttcaacccgtgcctccacc
acatga
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