Hydrogenophaga pseudoflava: HPF_14345
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Entry
HPF_14345 CDS
T06073
Name
(GenBank) PD-(D/E)XK nuclease superfamily protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
hpse
Hydrogenophaga pseudoflava
Brite
KEGG Orthology (KO) [BR:
hpse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpse03400
]
HPF_14345
Enzymes [BR:
hpse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPF_14345
DNA repair and recombination proteins [BR:
hpse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
HPF_14345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
QBM28877
UniProt:
A0A4P6WYQ2
LinkDB
All DBs
Position
complement(3005231..3007834)
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AA seq
867 aa
AA seq
DB search
MPVAPDGWQAVVRRIEAALASGGGSPDRWLVLLPYAQLIDPARRAWAASHPTGFAPRFET
TRNWAAGLTPWWPAPTDLSGDMARDSLVAEALVDRMARGQQDPALRAELVSRLVDAARQL
VPLAAAVPPGQRAAWAERQRTALTPGPQWEALVASLALAWVGSAGFATDVLWSDRAAPGH
AADRLWLLQGFQDDPLGQALAAHWVGRSEVFSLAKLLGVSESTHDGALCLQACTDPEDEA
RRAAATVIARVNEGRVPLALVANDRLLVRRISAMLHAVGVPLRDDTGWKLSTTQAAARLM
SLLRAADPRARTDDVLDLLKQGGIWPAGGVEALEQLAREHGLSSWRAVLRHAALAPLAPL
VPEGLTAMLESLQAARPLERWLDDLRSALEACGLWSMLCNDPAGQQVLQVLRLNEGASSE
LRQVGQALADGARTAPRMGLAAFSAWVRSVLESVSFLPRSDAEAPVTILPMAQLLGRGFA
AVVMPGCDEVTLDPSPELPGPWTAAQRVALGLPTREQLSAAAQGAWTAALCAPSVDVLWR
CQKDGEPLSPSPWVLALPDGESVAASAGSHDLRRRLDPAPVPPPQPSASALVPARLSASA
YQDLRDCPYRFFALRQLRVSDAPELEAEPDQRDLGNWLHAVLKVFHEERGDQRPGREADA
QRLDQIGDEVAAAMGLQGDATEAGFLPYQAVWPALREGYLGWLAGHEAQPGRPGPVFERA
EAELAAELPPWRLWGKLDRIDRQDSPEGRLPLVIDYKTESRQKTEDRVRHPFEDTQLAFY
AALLPDENLRAAYLSITDGRSASGKKGATHLIEQPLVLQARERLREGLVADLSRVAAGHP
MPALGEGRVCEHCDARGLCRKDFWSGA
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgccggtcgcccctgacggatggcaggcggtggtgcgccgcattgaggccgcgctggct
tcaggcggcggctcgccggatcggtggctggtgctgctgccgtatgcccagctgatcgat
ccggcccgtcgggcctgggctgcgtctcatcccaccggctttgcgccccgtttcgagacc
actcgcaactgggcggccgggctgacgccctggtggcccgcgcccaccgatctcagcggc
gacatggcgcgagacagtctggtggccgaggccctggtcgaccgcatggccaggggccag
caggacccggcgctgcgcgccgagctggtgtcgcgtctggtcgatgcggcccgccagctg
gtgccgctcgcagcagcggtgccgccggggcagcgggcggcctgggccgaacggcaacgc
accgccctgacgcccggcccgcagtgggaggcgctggtggcctccctggccctggcctgg
gtgggcagtgcagggtttgccaccgacgtgctctggtcggaccgcgcggcgcccggccac
gcggccgaccggctctggctgctgcagggttttcaggacgacccgctgggacaggcgctg
gccgcgcactgggtcgggcgttccgaggtgttctcgctggcaaagctgctgggcgtgtct
gaaagcacccacgacggtgcgctgtgccttcaggcctgcaccgacccggaagacgaggcg
cgccgcgccgctgcaacggtgatcgcccgcgtcaacgaggggcgggtgccgctggccctg
gtggccaacgaccgcctgctggtccgccgcatcagcgccatgctgcacgcggtcggtgtg
ccgctgcgcgacgacaccggctggaagctctccaccacccaggcggccgcaaggctcatg
agcctgctgcgagccgcggatccccgggcccgcaccgacgacgtgctcgaccttctcaag
cagggcggcatctggccggccggcggcgtggaagcgctggaacaactggcgcgcgagcat
ggtctctcatcctggcgggcggtgcttcggcacgcggcgctggcgcccctggcgcccctg
gtgcccgaggggctcacggcgatgctcgagtctctgcaggcggcgcgcccgctggagcgc
tggctcgacgatctgcgctccgcactggaggcatgcgggctgtggtccatgctctgcaac
gatccggccgggcagcaggtgctgcaggtgctgcgtttgaacgaaggggcctcgtccgag
ctgcggcaggtcgggcaggcgctggccgatggcgcccggacggcgccgcgcatgggtctt
gcggcgttctctgcctgggtccggagcgtgctggagagcgtcagcttcctgccgcgcagc
gacgccgaagcgcctgtgacaatcctgccgatggcccagttgctggggcgcggcttcgcg
gcggtggtgatgccgggctgtgacgaggtcacgctcgatcccagccccgagctgcccggc
ccctggacggccgcacagcgggtggcgctggggctgccgacgcgggagcagctgtcggcc
gcggcacaaggcgcctggaccgctgcgctctgtgcgccctcggtcgacgttctttggcgt
tgccagaaagacggcgagccgctgtcgcccagcccctgggtgctggcgctgccggatggt
gaatcggtcgctgcctccgcaggcagccacgacctgcgccgccgcctggaccccgcgccg
gtgccgccaccccagccgtcggcgtcggcgctggtgccggcccggctgtcggccagcgct
taccaggacctgcgcgactgtccctaccgcttcttcgcgctgcggcagctgcgggtgagc
gatgcgcccgagctggaggccgagcccgaccagcgcgacttgggcaactggctgcacgcg
gtgctcaaggtttttcacgaggagcgcggcgaccagcgcccgggccgcgaggccgatgcg
cagcggctggaccagatcggggacgaagtggcggccgccatgggcctgcagggcgacgcc
accgaggcgggttttcttccgtaccaggcggtctggccggcgctgcgcgagggctatctc
ggctggctggccggccacgaggcccagcccggccgtcccggccccgtgttcgaacgcgcc
gaggccgagctggcggcagaactgccgccctggcgcctctggggcaagctcgaccggatc
gaccgccaggacagcccggagggccggttgccgctggtcatcgactacaagaccgaaagc
cggcagaagaccgaagaccgggtcaggcatccgttcgaggacacacaactagcgttctat
gccgcactgctgcccgacgagaacctgcgtgcggcctacctgagcatcaccgacggccga
tcggccagcgggaaaaaaggcgccacccacctgatcgagcagccgctggtgctgcaggcg
cgcgaacgcctgcgcgagggcctggtggccgacctctcgcgcgtggcggccgggcacccg
atgcccgcgctcggcgaagggcgcgtctgcgagcactgcgacgcccggggcctgtgccgc
aaggacttctggagtggtgcatga
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