KEGG   Hydrogenophaga pseudoflava: HPF_16020
Entry
HPF_16020         CDS       T06073                                 
Symbol
ygcB
Name
(GenBank) CRISPR-associated endonuclease/helicase Cas3
  KO
K07012  CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
Organism
hpse  Hydrogenophaga pseudoflava
Brite
KEGG Orthology (KO) [BR:hpse00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:hpse02048]
    HPF_16020 (ygcB)
Enzymes [BR:hpse01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HPF_16020 (ygcB)
Prokaryotic defense system [BR:hpse02048]
 CRISPR-Cas system
  Type I CRISPR-Cas system
   Type I signiture cas proteins
    HPF_16020 (ygcB)
SSDB
Motif
Pfam: Cas3-like_C_2 DEAD AAA_19 Cas3_HD Helicase_C ResIII UvrD-helicase
Other DBs
NCBI-ProteinID: QBM29200
UniProt: A0A4P6WZM3
LinkDB
Position
complement(3356625..3358745)
AA seq 706 aa
MGERLKQSYPLAFMECLRPLPDQPAFVHLFAGLVQLADWLGSDTREAFFPYTAPGEDRIQ
SAVARAAYAVRSIGLDVSAWKNELNGQPPTFSAAFGVPTARPMQLAAAELSLGDIVVLEA
ETGSGKTEAALWRFVQLFEAGKVDSLYFALPTRVAATQLYQRVLALVTRLWPKGAPVVVR
ALPGYEAADDQEKISLPDFKVQWPDVPGDYTAHQRWVAESPKRFLAATIAVGTIDQALLG
ALKVKHAHMRHALLARSLLVVDEVHASDAYMTVLLEKLLQAHIKAGGHSILLSATLGAMA
RTRYLNIGNKKKHAPPSLADACAAAYPVLSFRDSTGIHLHPVAGNPQHKTVHWETLDAMD
NPKQIAMLAAQAAAQGARVLVVRNTVPAAVATLKALEELTLAQGGDWLFKVNGVSTVHHS
RYSRQDRPLLDQAVEAQLGKTRQDGRGRVIVGTQTLEQSLDIDADLLITDLCPMDVLLQR
LGRLHRHNRPEAERPEGYRQPHAWVLTPAGHDLSPLLKRARHGLGRFHDGGGVYPDLRMV
EATKRLVQAQPSRQIPADNRQLVEHATHIEALQGVEEELGPDWQKLGQAIEGDTSARRGV
GHLHTLPYYEAFGEVLFPDSDQKIATRLGAADRLVVFDPPQPGPFQQTVKQLALRHHQIP
EGVSPDALPTDIAVLPASAGFEFTLGSARYRYNRFGLERLKAHDKN
NT seq 2121 nt   +upstreamnt  +downstreamnt
atgggtgagcgcttgaagcaaagctatccgctggcgttcatggaatgcctgcgacctctg
cccgaccaacccgccttcgtacatctatttgccgggctggttcagctggctgactggctg
ggctctgacacgcgcgaagcattctttccctacaccgcgccgggggaagatcgaatccag
tcggctgtcgcgcgtgccgcttatgcggtgcggtccattggtttggatgtgtctgcttgg
aagaacgagctgaatggtcaaccgcccacctttagcgcagcttttggtgtgccgacggcc
cgccccatgcagttggccgcagccgagctctccttgggcgatatcgtggtgctggaggct
gaaaccggtagcggaaagaccgaggctgcgttgtggcgcttcgtgcagctgtttgaagcg
ggcaaggttgacagcctgtacttcgccttgcccacacgcgttgcggcgacacagctctat
caacgcgtgttggcactggtgacgcggctgtggccaaagggtgctcctgtggtcgtgcgc
gcgttgccaggatacgaagccgcggacgatcaggaaaaaatcagcctgcctgatttcaaa
gtccagtggccagatgtccctggtgactacacagctcaccagcggtgggtggccgaatca
cccaagcgctttctggccgccaccatcgcggtgggcaccatcgaccaggcattgcttggg
gcgctcaaggtcaagcacgcccacatgcggcacgccttgttggctcgcagtttgttggtg
gttgatgaggtgcacgcatccgatgcgtacatgaccgtgctgttggagaaattgcttcaa
gcgcacatcaaggccggtggtcactccatattgctttccgccaccctcggcgccatggcc
cgaacgcgctatctcaacattggaaacaaaaagaagcatgcgccaccctcgctggccgat
gcatgcgcagcagcctatccggtactcagcttccgagattcaactggcattcacttgcac
cccgtggcaggcaacccacaacacaaaacagtgcattgggagacgctggatgccatggat
aaccccaagcagatcgcgatgctcgccgcgcaggctgcggcacaaggcgcgcgcgtgctg
gtggtacgcaacaccgtgcctgctgccgtcgccacattgaaagcactggaagaactgacc
ttggctcaaggcggtgactggttgttcaaggtcaacggcgtcagcaccgttcaccacagc
cgctacagccgacaagaccgtcccttgcttgatcaagcggtcgaagcccaattggggaag
acacggcaagacgggagggggcgcgtcatcgtcggcacgcaaacactggaacaaagcctg
gacattgatgccgatttgctcatcaccgacctgtgccccatggatgtgctgctgcaacgc
ctgggccgtttgcacaggcacaaccgccccgaggctgagcggcccgagggttatcgccaa
ccacacgcctgggtgctcacacccgcgggtcacgatctctcacccttgctcaagcgtgct
cgccatggcctgggccgcttccacgatgggggtggtgtctatcccgacttgcgcatggtg
gaagccaccaagcgcctggttcaggcgcagcccagccgccagatacccgccgacaaccgc
cagctggttgagcacgccacgcacattgaggcgctgcagggggtcgaggaagaacttggg
cccgactggcagaaactggggcaggccattgagggcgacaccagtgctcgcagaggcgtt
gggcacctccacaccttgccttactacgaggcgtttggcgaggttctgtttccggacagt
gatcaaaaaattgcgactcgccttggcgcggctgaccgtcttgtggtttttgacccgccc
cagcccgggccgtttcagcagaccgtgaagcaattggcgctgcgtcaccatcagattccc
gagggggtcagccctgacgcgctgccaacagacatcgccgtattgcccgccagcgcaggt
tttgagttcaccttgggctccgcgcgttatcgttacaaccgctttgggcttgagcgcttg
aaagcccacgacaaaaactaa

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