Hydrogenophaga pseudoflava: HPF_16050
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Entry
HPF_16050 CDS
T06073
Symbol
alkA1
Name
(GenBank) DNA-3-methyladenine glycosylase
KO
K01247
DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
hpse
Hydrogenophaga pseudoflava
Pathway
hpse03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hpse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HPF_16050 (alkA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpse03400
]
HPF_16050 (alkA1)
Enzymes [BR:
hpse01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
HPF_16050 (alkA1)
DNA repair and recombination proteins [BR:
hpse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HPF_16050 (alkA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
Motif
Other DBs
NCBI-ProteinID:
QBM29205
UniProt:
A0A4P6X2X8
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All DBs
Position
complement(3364288..3364938)
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AA seq
216 aa
AA seq
DB search
MVTSQLPDVGPDAPLYWQEACRHLMKRDRVMKKLIPQHAGASLQSRGDAFVTLARSIVGQ
QISVKAAQSVWDRFEKLPRKMTPAYVLKLKVDDMRAAGLSARKVEYLVDLALHFANDQVH
VDKWAEMDDEAIIAELVAIRGIGRWTAEMFLIFHLMRPNVLPLDDIGLQNGISRAYFSGE
PVSRSEIREVAASWAPYCSVATWYIWRSLDPLPVSY
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atggtgacctcgcaattgcccgatgtcgggcccgatgcgccgctgtattggcaggaggca
tgtcggcatctgatgaagcgcgatcgggtgatgaaaaagctcatcccccagcacgcgggc
gccagccttcagtctcggggcgatgcgtttgtcacgctggcccgcagtattgtggggcag
cagatatcggtcaaggcggcgcaatccgtgtgggaccgcttcgaaaagctgccgcgcaag
atgacgccggcctatgtgctcaagctcaaagtggacgacatgcgggcagccggtctgtca
gcacgcaaggtcgagtacctggtggacctggcgcttcactttgccaacgatcaggtgcac
gtcgacaagtgggccgagatggacgacgaggcgatcatcgccgagttggtggccatccgc
ggcattggccgctggaccgccgagatgttcctgatttttcacctgatgcgtccgaacgtg
ctgccgctggacgacatcggcctgcagaacggcatcagccgcgcctacttttccggtgaa
ccggtcagccgcagcgagatccgcgaagtggctgcctcctgggcgccttactgcagcgtc
gccacttggtatatttggcgctcgctggacccactgccggtcagctactga
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